FC920914

Overview
NameFC920914
Unique NameFC920914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURM7 (Probable potassium transport system protein kup OS=Burkholderia mallei (strain NCTC 10247) GN=kup PE=3 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 63/230 (27.39%), Postives = 116/230 (50.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L ++V+V  W+ +             ++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T   + +P    H + +    H+  +F+   +  +P+V+  ER  V
Sbjct:  308 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTILAAVVMVKVWNWNKLLVAMIIGVFLVIDLGFFGANLLKVEQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLAPFLQGLLAHPPH----RVSGTAIYLTGNDTLVPVSLLHNLKHNKVLHERTIFMTFVTRDIPYVKDHERVTV 533          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP3_RALEH (Probable potassium transport system protein kup 3 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=kup3 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 64/227 (28.19%), Postives = 115/227 (50.66%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYG----TLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  FS+  Q   LG  PR+++++TS+   GQIY+P +NW L++L + + + F+ ++++  A G+AV T M++TT L ++ +   W                V+  +F+A+L+K  EG W P+ L       +  W+ G      +  E  +  +  I  +L+  P+    RV G  +  T  +  +P    H + +    H+ VVFL   +  +P+V  D+R
Sbjct:  310 SQAVISGAFSLTSQAIQLGFVPRMRVLYTSAAEIGQIYLPVVNWLLLVLVIGVVISFKKSENLAAAYGIAVTTTMVITTFLAAVCMRNVWKWDPALVAVLGTSFLLVDLAFFAANLLKIAEGGWFPLLLGSAAFFMLMTWYSGRKLLRARSLEDGIPLEPFIAGLLAHPPH----RVEGTAVFLTGSIDTVPVSLLHNLKHNRVLHERVVFLTFVTRDIPYVDDDQR 532          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP3_BRASB (Probable potassium transport system protein kup 3 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=kup3 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 67/223 (30.04%), Postives = 108/223 (48.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  +S+ +Q   LG  PR +I HTS    GQIYIP IN  L+   + + + F+ +  + +A G++V   M+VT  +  +VI   W  S             ++  + SA+L+K LEG WVP+AL    +  MY W  G+   +E   + +  +  ++++       RV G  +  T      P    H + +    H+  V L I++ P P + P ER
Sbjct:  319 SQAVITGAYSLTRQAIQLGLLPRFEIRHTSEAHSGQIYIPRINKLLLASVVLLVLLFKSSSALASAYGISVTGTMVVTAMMGFVVIWKVWRWSPLAAGALIAPFLFLDLTFLSANLLKVLEGGWVPLALGGFVMTLMYTWRRGSRLLFEKSRKLEFPLADLVAMLEKRPPQRVPGTAVFLTSDPLSAPTALMHSLKHYKVLHEKNVILTIETAPTPRIDPSER 541          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_BRASO (Probable potassium transport system protein kup 2 OS=Bradyrhizobium sp. (strain ORS278) GN=kup2 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.724e-25
Identity = 66/223 (29.60%), Postives = 109/223 (48.88%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  +S+ +Q   LG  PR +I HTS    GQIYIP IN  L++  + + + F+ +  + +A G++V   M+VT  +  +VI   W  S             ++  + SA+L+K LEG WVP+AL    +  MY W  G+   ++   + +  +  ++++       RV G  +  T      P    H + +    H+  V L I++ P P + P ER
Sbjct:  319 SQAVITGAYSLTRQAIQLGLLPRFEIRHTSEAHSGQIYIPRINKLLLVSVVLLVLLFKSSSALASAYGISVTGTMVVTAMMGFVVIWKVWRWSPIAAGALIAPFLFLDLTFLSANLLKVLEGGWVPLALGGFVMTLMYTWRRGSRLLFDKSRKLEFPLADLVAMLEKRPPQRVAGTAVFLTSDPLSAPTALMHSLKHYKVLHEKNVILTIETAPTPRIDPSER 541          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_PSEA7 (Probable potassium transport system protein kup OS=Pseudomonas aeruginosa (strain PA7) GN=kup PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 69/226 (30.53%), Postives = 108/226 (47.79%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG  PR+ I HTSS   GQIYI  +NW LM+  + + +GF  +  +  A G+AV   ML+TT LM +VI   W               +V++L+F+A++ K ++G   P+    +  + M  W  G     E   +  + +   +S        RV+G  +  T     +P    H + +    H+ VV L + +   P V PD RF V
Sbjct:  313 SQAVISGAFSLTRQAIQLGYVPRMSIQHTSSHEQGQIYIGGVNWALMVGVVLLVLGFESSASLAAAYGVAVTGTMLITTLLMGVVIWRLWKWPLWLGVPFFCVMLAVDSLFFAANVPKVVQGGAFPVIAGIVIFILMSTWKRGRQLLVERLDEGSLPLPVFISSMRVQPPHRVQGTAIFLTARTDAVPHALLHNLLHNQVLHEQVVLLTVVNEDSPRVAPDRRFEV 538          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BRUO2 (Probable potassium transport system protein kup OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=kup PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 66/223 (29.60%), Postives = 110/223 (49.33%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  +S+ +Q   L   PR++I HTS K+HGQIYIP +N  L L  + + +GF  + ++  A G+AV   MLVTT L+ +V+   W+               ++ L+FSA++IK  EG W  I ++ + ++ M+ W  GT   ++   + +V ++ I+          V G  +  T      P    H + +    H+  V L + +   P V   +R
Sbjct:  330 SQAVITGAYSVARQAVQLNILPRLEIQHTSEKLHGQIYIPRVNLLLGLAVVILVLGFEKSSNLAAAYGIAVTGNMLVTTVLLYIVMTRIWNWRVSRALPIILGFLVIDMLFFSANIIKVHEGGWASIGIATVLVLIMWTWVRGTRHLFQKTRKAEVPLDLIVEQMAKRPPTIVPGTAVFLTGDPKSAPTALMHSLKHYKVLHENNVILTVVTASKPWVALADR 552          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_LEGPC (Probable potassium transport system protein kup 2 OS=Legionella pneumophila (strain Corby) GN=kup2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 70/224 (31.25%), Postives = 115/224 (51.34%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERF 675
            SQAII+A FSI+KQ S L   PR+KI+ TS    G++Y+P IN+ L L   ++ V F+ + ++ +A G+AV   ML+TT L+ ++   CW                +E  +F+ ++ K L G W+PI ++F+  V MY WH G  K  E   ++ +   +I+       I R  G+GL   +          H +     F + +VF+ IK    P++  +++F
Sbjct:  300 SQAIISAAFSILKQASLLNLIPRLKIVFTSKFEKGEVYLPLINFILALGTCSLVVIFKSSSNLADAYGIAVNLDMLITTVLVGIIAYRCWSWHAFKILIFLLIL-IIELAFFAGNIPKLLTGGWIPILIAFLGFVVMYTWHCGFEKLRELHHRDALMDAFIIDELNQNKISRQPGMGLYIIDPYDCEGESLLHHLRLNRIFFENMVFVSIKIENKPYIPIEDKF 522          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_LEGPA (Probable potassium transport system protein kup 2 OS=Legionella pneumophila (strain Paris) GN=kup2 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.476e-25
Identity = 70/224 (31.25%), Postives = 115/224 (51.34%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERF 675
            SQAII+A FSI+KQ S L   PR+KI+ TS    G++Y+P IN+ L L   ++ V F+ + ++ +A G+AV   ML+TT L+ ++   CW                +E  +F+ ++ K L G W+PI ++F+  V MY WH G  K  E   ++ +   +I+       I R  G+GL   +          H +     F + +VF+ IK    P++  +++F
Sbjct:  300 SQAIISAAFSILKQASLLNLIPRLKIVFTSKFEKGEVYLPLINFILALGTCSLVVIFKSSSNLADAYGIAVNLDMLITTVLVGIIAYRCWSWHAFKILIFLLIL-IIELAFFAGNIPKLLTGGWIPILIAFLGFVVMYTWHCGFEKLRELHHRDALMDAFIIDELNQNKISRQPGMGLYIIDPYDCEGESLLHHLRLNRIFFENMVFVSIKIENKPYIPIEDKF 522          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_RALEJ (Probable potassium transport system protein kup OS=Ralstonia eutropha (strain JMP134) GN=kup PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 66/227 (29.07%), Postives = 116/227 (51.10%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYG----TLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  FS+  Q   LG  PR+++ +TS+   GQIY+P INW L++L +A+ + F+ ++++  A G+AV T M++TT L ++V+   W  +             V+  +F+A+L+K  EG W P+ L       +  W+ G      +  E  +  +  I  +L+  P+    RV G  +  T     +P    H + +    H+ VVFL   +  +P+V  ++R
Sbjct:  314 SQAVISGAFSLTSQAIQLGFVPRMRVRYTSAAEIGQIYLPVINWILLVLVVAVVISFKKSENLAAAYGIAVTTTMVITTFLAAVVMRNVWKWNPALVTLLGLSFLLVDLAFFAANLLKVAEGGWFPLLLGSTAFFLLMTWYSGRKLLRARSLEDGIPLEPFIAGLLAHPPH----RVEGTAVFLTGNTESVPVSLLHNLKHNRVLHERVVFLSFVTRDIPYVDDEQR 536          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_NITMU (Probable potassium transport system protein kup OS=Nitrosospira multiformis (strain ATCC 25196 / NCIMB 11849) GN=kup PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 63/226 (27.88%), Postives = 108/226 (47.79%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQ++I+  FS+ +Q   LG  PR++I HTS +  GQIYIP +NWTL+ + L   +GF  + ++ +A G+AV T M++ T L   V+   W+              ++++ +FSA+++K  +G W P+ +  +    M  W  G     +      + +   L         RV G  +  T    G+P    H + +    H+ VVFL +     P V  ++R  +
Sbjct:  311 SQSVISGVFSVTRQAIQLGFLPRMQIRHTSERKIGQIYIPFVNWTLLSVVLMAVLGFGSSSNLASAYGVAVTTTMVIETTLTFFVLRYVWNYPFLLGILVTAFFLAIDSAFFSATILKVAQGGWFPLVIGSVIFFIMITWSRGRQMLVDHLRSVAIPLQSFLESLIAHPPTRVAGTSVFLTANPDGVPHALLHNLAHNQVLHERVVFLTVTYQETPWVPVEQRISI 536          
The following BLAST results are available for this feature:
BLAST of FC920914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
KUP_BURM75.724e-2527.39Probable potassium transport system protein kup OS... [more]
KUP3_RALEH5.724e-2528.19Probable potassium transport system protein kup 3 ... [more]
KUP3_BRASB5.724e-2530.04Probable potassium transport system protein kup 3 ... [more]
KUP2_BRASO5.724e-2529.60Probable potassium transport system protein kup 2 ... [more]
KUP_PSEA77.476e-2530.53Probable potassium transport system protein kup OS... [more]
KUP_BRUO27.476e-2529.60Probable potassium transport system protein kup OS... [more]
KUP2_LEGPC7.476e-2531.25Probable potassium transport system protein kup 2 ... [more]
KUP2_LEGPA7.476e-2531.25Probable potassium transport system protein kup 2 ... [more]
KUP_RALEJ9.763e-2529.07Probable potassium transport system protein kup OS... [more]
KUP_NITMU9.763e-2527.88Probable potassium transport system protein kup OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32014G04EF RVDevelop1 Citrus clementina cDNA clone C32014G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920914 ID=FC920914; Name=FC920914; organism=Citrus clementina; type=EST; length=683bp
GGAAGTCAAGCCATTATCACTGCAACTTTCTCGATAATAAAACAGTGCTC
TGCTTTGGGTTGCTTTCCAAGGGTCAAAATCATTCATACATCTTCCAAAA
TACATGGCCAGATTTACATTCCAGAGATCAACTGGACATTAATGCTTTTA
TGCTTGGCTATTACTGTTGGTTTTAGAGACACAAAACACATGGGGAACGC
ATCAGGTTTAGCAGTTATAACTGTCATGCTGGTAACAACCTGTCTAATGT
CTCTGGTCATTGTCTTATGCTGGCATCAGAGCATTTTCTTTGCCATTTGT
TTTATAATCTTCTTCGGCTCGGTTGAAGCACTTTACTTTTCAGCATCCCT
CATCAAGTTCTTAGAAGGGGCATGGGTTCCTATTGCCCTCTCATTTATTT
TTCTAGTTGCTATGTATGTTTGGCACTATGGCACACTCAAGAAATATGAG
TTTGATGTTCAAAATAAGGTCTCCATCAACTGGATTTTGAGCTTAGGCCC
GAATCTGGGAATTGTTAGGGTCCGGGGTATTGGCCTTATACATACAGAGC
TAGTTTCTGGAATCCCAGCAATTTTCTCTCACTTTGTCACCAACCTTCCA
GCTTTTCACCAGGTTGTGGTCTTCCTCTGCATCAAATCAGTTCCAGTGCC
ACATGTCAGACCAGACGAAAGGTTCCTGGTGGG
back to top