FC920914

Overview
NameFC920914
Unique NameFC920914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_ACIAC (Probable potassium transport system protein kup OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=kup PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.665e-24
Identity = 70/226 (30.97%), Postives = 106/226 (46.90%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+IT  FS+ KQ   LG  PR+ I+HTS +  GQIYIP +NW L L  +   V FR + ++  A G+AV   ML+TT L   VI   W                V+  +F ++L+K L+G W P+ +  I  + M  W  G     E    + + +   L+        RV G  +  T     +P    H + +    HQ  +F+ +++  VP +  D+R  V
Sbjct:  301 SQALITGAFSVTKQVIQLGYLPRLNILHTSVRDTGQIYIPFVNWALFLAIVLAVVMFRSSSNLAAAYGIAVTLDMLITTVLTFFVIRYGWRYPLALCIAATGFFFLVDLAFFGSNLLKLLQGGWFPLMIGSIVFMLMMTWKRGRELLNEKLRADAIDLRDFLTAVFVNPPTRVDGTAVFLTAEPGAVPNALLHNLKHNKVLHQQNLFVTVRNHEVPWIGLDKRLQV 526          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_AZOSB (Probable potassium transport system protein kup OS=Azoarcus sp. (strain BH72) GN=kup PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 63/223 (28.25%), Postives = 105/223 (47.09%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  FS+ +Q   LG  PR++ +HTS    GQIY+P +NW L+   +A+ VGF+ +  + +A G+AV   M++ T L  +V+   W               +V+  +FSA+ +K   G W P+ +       +  W  G     E    + + ++  +         RV G  +  T  + G+P    H + +    H+ VV L + +  VPHV   ER
Sbjct:  317 SQAVISGAFSLTRQAIQLGYAPRMQTLHTSEHEIGQIYVPGVNWMLLGAVVALVVGFQSSSALASAYGIAVTLTMMIDTVLAFVVVRSLWKWGRAKAVLFLVVFLAVDIAFFSATTVKIFAGGWFPLLIGAAIFTLLRTWKRGRSLLNERIRSDTMPLDIFIQSMFQSPPPRVEGTAVFMTTWLDGVPRALLHNLIHNKVLHERVVLLRVDTADVPHVPEGER 539          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_RHOPB (Probable potassium transport system protein kup 2 OS=Rhodopseudomonas palustris (strain BisB18) GN=kup2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.175e-24
Identity = 67/223 (30.04%), Postives = 110/223 (49.33%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  FS+I Q   LG  PR ++ +TS    GQIY+P +N  L++  L + + FR++  + +A G+AV T M+    +  +VI   W               +V+A++FSA+L+K LEGAWVP+    +    ++VW  G+        + +V +N ++          V+G  +  T     +P    H + +    H+  V L I++   P V P ER
Sbjct:  309 SQAVITGAFSLISQAVQLGLLPRFEVRYTSETHAGQIYLPRVNMLLLIGVLMLVLLFRNSSGLASAYGIAVSTTMVADGVMGFVVIWKLWGWRPAAAAALIFPFVAVDAIFFSANLLKLLEGAWVPLLFGLLMATLIWVWRRGSAMLILKTRRTEVPLNDLIQSLEKRPPHIVKGTAVFLTSDPEYVPTALLHNLKHNKVLHEHNVILTIQTAQTPRVDPAER 531          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_PSEPF (Probable potassium transport system protein kup OS=Pseudomonas fluorescens (strain Pf0-1) GN=kup PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 70/226 (30.97%), Postives = 108/226 (47.79%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG  PR+ I HTSS   GQIYI  +NW+LM+  + + +GF  +  + +A G+AV   ML+TT L+S V++L W                V+ LYF+A++ K ++G   P+       V M  W  G     E   +  + +   +S        RV+G  +  T     +P    H + +    H+ VV L +    +P V P  RF V
Sbjct:  312 SQAVISGAFSLTRQAIQLGYIPRMYIQHTSSDEQGQIYIGAVNWSLMVGVVLLVIGFESSGALASAYGVAVTGTMLMTTILVSAVMLLLWKWPPILAVPVLIGFLLVDGLYFAANVPKIVQGGAFPVIAGIALFVLMTTWKRGKQLLVERLDEGALPLPIFISSIRVQPPHRVQGTAVFLTARSDAVPHALLHNLLHNQVLHEQVVLLTVVYEDIPRVPPSRRFEV 537          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_OCHA4 (Probable potassium transport system protein kup OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=kup PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 65/223 (29.15%), Postives = 108/223 (48.43%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  +S+ +Q   L   PR++I HTS K+HGQIYIP +N  L L  + + +GF  + ++  A G+AV   MLVTT L+ +V+   W+               ++ ++F A++IK  EG W  I ++ I ++ M+ W  GT   +    + +V ++ I+          V G  +  T      P    H + +    H+  V L + +   P V   +R
Sbjct:  330 SQAVITGAYSVARQAVQLNILPRLEIQHTSEKLHGQIYIPRVNLLLGLAVVILVLGFEKSSNLAAAYGIAVTGNMLVTTVLLYIVMTRIWNWRVSRALPIIVGFLIIDIMFFGANIIKVHEGGWASIGIAAILVLIMWTWVRGTRHLFNKTRKAEVPLDLIVQQMTKRPPTIVPGTAVFLTGDPKSAPTALMHSLKHYKVLHENNVILTVVTASKPWVSSADR 552          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_RALEH (Probable potassium transport system protein kup 1 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=kup1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.841e-24
Identity = 65/227 (28.63%), Postives = 113/227 (49.78%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYG----TLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  FS+  Q   LG  PR+++ +TS+   GQIY+P INW L++L + + + F+ ++++  A G+AV T M++TT L ++ +   W  +             V+  +F+A+L+K  EG W P+ L       +  W+ G      +  E  +  +  I  +L+  P+    RV G  +  T     +P    H + +    H+ VVFL   +  +P+V  D R
Sbjct:  310 SQAVISGAFSLTSQAIQLGFLPRMRVRYTSAAEIGQIYLPVINWLLLVLVIGVVISFKKSENLAAAYGIAVTTTMVITTILAAVCMRSVWKWNPALVAVVGLAFIVVDLSFFAANLLKVAEGGWFPLLLGSAAFFLLMTWYSGRKLLRARSLEDGIPLEPFIAGLLAHPPH----RVEGTAVFLTGNTESVPVSLLHNLKHNRVLHERVVFLTFVTRDIPYVDDDHR 532          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_METPP (Probable potassium transport system protein kup OS=Methylibium petroleiphilum (strain PM1) GN=kup PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 66/218 (30.28%), Postives = 101/218 (46.33%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHV 657
            SQA+ITA FS+ KQ   LG FPR+++ HTS K  GQIY+P +NW L    +   V F  +  + +A G+AV T ML+TT +   VI   W                V+A++F+A+ IK L+G W P+A+       M  W  G     E   +  + +   L         RV+G  +         P    H + +    H+  +F+ ++   VP +
Sbjct:  307 SQALITAAFSVTKQAIQLGYFPRLRVTHTSVKETGQIYVPFVNWGLYACIVLAVVTFGSSSKLASAYGIAVTTDMLITTTMTFFVIRYSWKYPWALCVAATGFFFLVDAMFFAANAIKILDGGWFPLAIGAAMFTLMMTWKQGRRLMSERLREEAIDLKSFLESVFISPPTRVQGTAVFLAAEQGSTPNALLHNLKHNKVLHEQNLFVTVRHHEVPWI 524          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BRUMB (Probable potassium transport system protein kup OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=kup PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 65/223 (29.15%), Postives = 109/223 (48.88%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  +S+ +Q   L    R++I HTS K+HGQIYIP +N  L L  + + +GF  + ++  A G+AV   MLVTT L+ +V+   W+               ++ L+FSA++IK  EG W  I ++ + ++ M+ W  GT   ++   + +V ++ I+          V G  +  T      P    H + +    H+  V L + +   P V   +R
Sbjct:  330 SQAVITGAYSVARQAVQLNILSRLEIQHTSEKLHGQIYIPRVNLLLGLAVVILVLGFEKSSNLAAAYGIAVTGNMLVTTVLLYIVMTRIWNWRVSRALPIILGFLVIDMLFFSANIIKVHEGGWASIGIATVLVLIMWTWVRGTRHLFQKTRKAEVPLDLIVEQMAKRPPTIVPGTAVFLTGDPKSAPTALMHSLKHYKVLHENNVILTVVTASKPWVASADR 552          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_BRAJA (Probable potassium transport system protein kup 2 OS=Bradyrhizobium japonicum GN=kup2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 64/223 (28.70%), Postives = 109/223 (48.88%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  +S+ +Q   LG  PR +I HTS    GQI+IP IN  L++  + + + FR +  + +A G++V   M+VT  +  +VI   W  S             ++  + +A+L+K  EG WVP+AL  + ++ MY W  G+   +E   + +  +  ++++       RV G  +  T      P    H + +    H+  V L I++   P + P ER
Sbjct:  322 SQAVITGAYSLTRQAIQLGLLPRFEIRHTSEAHSGQIFIPRINQLLLVAVVLLVLLFRSSSALASAYGISVTGTMVVTAMMGFVVIWKVWRWSPLAAAALIAPFLFLDLTFLAANLLKVFEGGWVPLALGALMIILMYTWRRGSRLLFEKSRKLEFPLADLVAMLEKRPPQRVPGTAVFLTSDPLSAPTALMHSLKHYKVLHEKNVILTIETAQTPRIDPAER 544          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_RHILO (Probable potassium transport system protein kup 1 OS=Rhizobium loti GN=kup1 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.710e-24
Identity = 62/227 (27.31%), Postives = 114/227 (50.22%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINW----ILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  FS+ +Q   L   PR++I+HTS K  GQIY+P +N  L L+ + + VGF ++  + +A G++V   MLVTT L+ +V+   W                ++  +F+++++K  EG W  + ++F  ++ M+ W  G+   ++   +N++ +++    +L   P L    V G  +  T      P    H + +    H+  V L + + P P V   +R
Sbjct:  318 SQAVISGAFSLTRQAVQLNMLPRLEILHTSEKQSGQIYMPRVNLLLALVVMMLVVGFGESSKLASAYGISVTGNMLVTTVLLYVVMTRIWKWRLWVAISLTVLFAFIDIGFFASNIVKVFEGGWASLLVAFTIVLGMWTWVRGSRYLFDKTRRNEIPLDFLAGNLLKKKPQL----VSGTAVFLTSDPLSAPTALMHSLKHYKVLHEQNVILSVVTAPQPVVPDSDR 540          
The following BLAST results are available for this feature:
BLAST of FC920914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
KUP_ACIAC1.665e-2430.97Probable potassium transport system protein kup OS... [more]
KUP_AZOSB2.175e-2428.25Probable potassium transport system protein kup OS... [more]
KUP2_RHOPB2.175e-2430.04Probable potassium transport system protein kup 2 ... [more]
KUP_PSEPF2.841e-2430.97Probable potassium transport system protein kup OS... [more]
KUP_OCHA42.841e-2429.15Probable potassium transport system protein kup OS... [more]
KUP1_RALEH2.841e-2428.63Probable potassium transport system protein kup 1 ... [more]
KUP_METPP3.710e-2430.28Probable potassium transport system protein kup OS... [more]
KUP_BRUMB3.710e-2429.15Probable potassium transport system protein kup OS... [more]
KUP2_BRAJA3.710e-2428.70Probable potassium transport system protein kup 2 ... [more]
KUP1_RHILO3.710e-2427.31Probable potassium transport system protein kup 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32014G04EF RVDevelop1 Citrus clementina cDNA clone C32014G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920914 ID=FC920914; Name=FC920914; organism=Citrus clementina; type=EST; length=683bp
GGAAGTCAAGCCATTATCACTGCAACTTTCTCGATAATAAAACAGTGCTC
TGCTTTGGGTTGCTTTCCAAGGGTCAAAATCATTCATACATCTTCCAAAA
TACATGGCCAGATTTACATTCCAGAGATCAACTGGACATTAATGCTTTTA
TGCTTGGCTATTACTGTTGGTTTTAGAGACACAAAACACATGGGGAACGC
ATCAGGTTTAGCAGTTATAACTGTCATGCTGGTAACAACCTGTCTAATGT
CTCTGGTCATTGTCTTATGCTGGCATCAGAGCATTTTCTTTGCCATTTGT
TTTATAATCTTCTTCGGCTCGGTTGAAGCACTTTACTTTTCAGCATCCCT
CATCAAGTTCTTAGAAGGGGCATGGGTTCCTATTGCCCTCTCATTTATTT
TTCTAGTTGCTATGTATGTTTGGCACTATGGCACACTCAAGAAATATGAG
TTTGATGTTCAAAATAAGGTCTCCATCAACTGGATTTTGAGCTTAGGCCC
GAATCTGGGAATTGTTAGGGTCCGGGGTATTGGCCTTATACATACAGAGC
TAGTTTCTGGAATCCCAGCAATTTTCTCTCACTTTGTCACCAACCTTCCA
GCTTTTCACCAGGTTGTGGTCTTCCTCTGCATCAAATCAGTTCCAGTGCC
ACATGTCAGACCAGACGAAAGGTTCCTGGTGGG
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