FC920914

Overview
NameFC920914
Unique NameFC920914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_BRAJA (Probable potassium transport system protein kup 1 OS=Bradyrhizobium japonicum GN=kup1 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.235e-19
Identity = 64/228 (28.07%), Postives = 106/228 (46.49%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGT----LKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERF 675
            SQA+IT  +S++ Q   LG  PR ++ +TS    GQIY+P +N  L++  + + + F    ++ +A G+AV T M+    +  +VI   W+               V+  +FSA+L+K LEGAWVP+         ++ W  G+     K    +V     I  +    P++    V+G  +  T   S +P    H + +    H+  V L I++   P V   ERF
Sbjct:  336 SQAVITGAYSLVYQAVQLGLLPRFEVRYTSESHAGQIYLPRVNRLLLIGVMLLVLLFHTPSNLASAYGIAVSTTMVADGIMGFVVIWKLWNWRAATAAAVILPFVVVDMSFFSANLLKLLEGAWVPLLFGAAMAGTIWTWRRGSGILIQKTRRIEVPLDDLIRSLEKRPPHI----VKGTAVFLTSDPSFVPTALLHNLKHNKVLHEHNVVLTIETAHTPRVDLSERF 559          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_CORGB (Probable potassium transport system protein kup OS=Corynebacterium glutamicum (strain R) GN=kup PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 61/226 (26.99%), Postives = 111/226 (49.12%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWI---LSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  +S+ KQ   L   PR+ I HTS K  GQIY+P +N  L +  + + + FR ++ + +A GLAV      T  L+S++ ++  H +           G  E L F+++  K  +G W+P+  + + +V M  W +G+ +  +   + ++ ++     L    N+G+ +V  + +        +P      V +L   ++ +V + I    VPHV P ER
Sbjct:  310 SQAVISGAYSLTKQAVNLKLLPRMVIRHTSRKEEGQIYMPLVNGLLFVSVMVVVLVFRSSESLASAYGLAVTG----TLVLVSVLYLIYVHTTWWKTALFIVFIGIPEVLLFASNTTKIHDGGWLPLLTAAVLIVVMRTWEWGSDRVNQERAELELPMDKFLEKLDQPHNIGLRKVAEVAVFPHGTSDTVPLSLVRCVKDLKLLYREIVIVRIVQEHVPHVPPAER 531          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_ACIAD (Probable potassium transport system protein kup OS=Acinetobacter sp. (strain ADP1) GN=kup PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.613e-19
Identity = 58/226 (25.66%), Postives = 106/226 (46.90%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYG---TLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+IT  FS++ Q   L   PR+ +IHTS    GQIY+P INW L +    + + F  + ++ +A G+AV   ML  T L+S++    W               +++ ++ +++ +K L G WVP  +  +    +  W  G      + E D    +S+ +I S+G +     V G  +  T   + +P    H + +    H   + + + +  +P+V  ++R
Sbjct:  303 SQAVITGVFSMVNQAIQLRYLPRLTVIHTSDVEQGQIYVPFINWVLYISVFFLIILFESSSNLASAYGVAVTMTMLCVTILISVLAYGAWGWPWWKVTLFAVPFLALDGIFVASTSLKILSGGWVPFVIGVVVFTILMTWKRGREIVFNRLETDAL-PISL-FIKSIGSSAETHFVPGDAVFLTGNPNIVPHAMLHNIKHNKVLHSRNIMVTVYTEDIPYVAKEQR 526          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_BIFLO (Probable potassium transport system protein kup 1 OS=Bifidobacterium longum GN=kup1 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 48/145 (33.10%), Postives = 84/145 (57.93%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXG-SVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGT 435
            SQA+IT  F+++ + + L   P +++ + + +  GQ+YIP +N  L +  LA+ + FRD++H+  A GLA+   M+ TT L+ + +   WH+S             +++ L+F+AS+ KFL G W  + L+   L+ MY W+ GT
Sbjct:  238 SQALITGAFTMVSEATGLNWMPHLQVCYPA-RTRGQLYIPVVNVVLCVATLAVLLLFRDSEHISAAYGLALTITMITTTILLGIYL---WHRSNKFGAVVFTIVFLAIQVLFFAASMAKFLHGGWFTLLLTLAILMIMYTWNEGT 378          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP3_SINMW (Probable potassium transport system protein kup 3 OS=Sinorhizobium medicae (strain WSM419) GN=kup3 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 61/229 (26.64%), Postives = 106/229 (46.29%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSL---GPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQ++IT  FS+I+Q   LG  PR +I +TS    GQIY+P +N  L+   LA+ + F  ++ +  A G+++   M++ T L    +   W               S+E ++  A+L K   G +VPI ++   ++ M+ W  G     E   +  V ++  ++          V V G  +  T      PA+  H + +    HQ  V + IK+  VP+V   +R+ +
Sbjct:  309 SQSVITGAFSLIRQAIHLGFLPRFEICYTSETQTGQIYLPLVNTILLTGVLALMLMFGSSEALAPAYGVSITGAMVIDTILAFEFVRRQWGWPALTAIAVLLPLFSLELIFLGANLFKIHHGGYVPILIAGTLIMMMWTWRKGVSLLREKTARQDVPLDQFIATVERKSEHAPVEVPGTAIFLTATPDTTPAVLLHNIKHNHVLHQHNVIMTIKTAKVPYVPEKDRYTI 537          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_RHIL3 (Probable potassium transport system protein kup 1 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=kup1 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.593e-19
Identity = 60/229 (26.20%), Postives = 107/229 (46.72%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILS---LGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+IT  FS+++Q   LG  PR++I+ TS    GQI++P +N  L +  + + +GF+ +  +  A G++V   M+VT+ +    +   W+ S             +E ++  A+L+K  +G ++PI ++  F V M+ W  GT    E      + +   +S           +V G  +  T      PA   H + +    H   V L I+++  P V   +R+ V
Sbjct:  308 SQAVITGAFSMVRQGINLGFLPRMEILFTSETNTGQIFVPSVNAVLFIGVIFLVLGFKTSDALATAYGISVTGAMVVTSIMAFEFVRARWNWSLPVAVIALAPLVVLEMIFLGANLLKIHDGGYIPIMIATAFTVVMWTWRRGTAILMEKTRHTDIPLASFVSSIERKSEHSPAQVPGTAIFLTSDPESAPAALLHNLKHNHVLHDRNVILTIRTINKPRVPSHDRYRV 536          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_SINMW (Probable potassium transport system protein kup 2 OS=Sinorhizobium medicae (strain WSM419) GN=kup2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 62/229 (27.07%), Postives = 103/229 (44.98%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSL---GPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+IT  FS+++Q   LG  PR +I  TS    GQIY+P +N  L+   + +   F  ++ +  A G++V   M+VTT L        W  S             +E  +  A+L K  +G +VPI ++   +  M+ W  G     E   +  + ++  +++         V V G  +  T      PA+  H + +    HQ  V L IK+  VP+V   +R+ +
Sbjct:  309 SQAVITGAFSLVRQAINLGFLPRFEICFTSETQTGQIYLPFVNNALLAGVIVLMFMFGSSESLATAYGISVTGAMVVTTVLAFEFARHQWGWSTLTATAVLLPLLVLELFFLGANLFKIHDGGYVPILIAGTLMTTMWTWRKGVSLLREKTARQDIPLSQFMAMVERKSEHAPVEVPGTAIFLTATPDTTPAVLLHNIKHNHVLHQHNVILTIKTARVPYVPEKDRYTI 537          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_RHIME (Probable potassium transport system protein kup 2 OS=Rhizobium meliloti GN=kup2 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 59/229 (25.76%), Postives = 108/229 (47.16%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSL---GPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQ++IT  FS+I+Q   LG  PR +I +TS    GQIY+P +N  L+   LA+ + F  ++ +  A G+++   M++ T L    +   W               ++E ++  A+L+K   G +VPI ++   +  M+ W  G     E   +  + ++  +++         V+V G  +  T      PA+  H + +    HQ  V + IK+  VP+V   +R+ +
Sbjct:  309 SQSVITGAFSLIRQAIHLGFLPRFEICYTSETQTGQIYLPLVNTILLTGVLALMLMFGSSEALAPAYGVSITGAMVIDTILAFEFVRRQWGWPALTAIAVLLPLFNLELVFLGANLLKVHHGGYVPILIAGTLITMMWTWRKGVSVLREKTARQDIPLSQFMAIVERKSEHAPVQVPGTAIFLTATPDTTPAVLLHNIKHNHVLHQHNVIMTIKTARVPYVPEKDRYTI 537          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_METCA (Probable potassium transport system protein kup OS=Methylococcus capsulatus GN=kup PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 62/227 (27.31%), Postives = 100/227 (44.05%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILS-LGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+  Q   L   PR +++HTS    GQIY P +N  L++  LA+ + F  +  + +A GLAV+  M+VTT L  +V    W               SV+  + +A+L K  +G W+P++L  I    M  W  G    +    Q   S++  L  L       R  G  +  T     +P        +    HQ V+ L + ++  P+    E+  +
Sbjct:  304 SQAVISGAFSLTHQAIQLDYLPRQRMVHTSESERGQIYAPAVNRLLLISVLALVLAFGSSSRLASAYGLAVVGTMVVTTLLALVVAHDTWRWPGLALLVTGAVLLSVDLSFLTANLAKLGDGGWIPLSLGLILATVMSTWKKGRDVLFARLQQESESLSRFLQRLTDEPPPFRPVGTAIFLTARNLSLPFALLRNYEHNQVIHQRVILLTMTTLDKPYAAEKEKITI 530          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_POLSJ (Probable potassium transport system protein kup 1 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=kup1 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.005e-19
Identity = 47/143 (32.87%), Postives = 74/143 (51.75%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYG 432
            SQA+I+  +S+ KQ   LG  PR+++ +TS++  GQIY+PE+NW L+   L   VGF  +  +  A G+AV   ML+TT L   V+   W               +++ +   A  +KF +G W P+ L  +  + M  W  G
Sbjct:  320 SQAVISGAYSMTKQAVQLGLLPRMQVQYTSAREAGQIYMPEVNWILLAAVLLAVVGFGSSSALAAAYGIAVTMTMLITTVLTFFVVRHGWGYPLPVALAATGVFLALDTVLVIACSLKFWQGGWFPLVLGVVLFILMATWKRG 462          
The following BLAST results are available for this feature:
BLAST of FC920914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
KUP1_BRAJA1.235e-1928.07Probable potassium transport system protein kup 1 ... [more]
KUP_CORGB1.613e-1926.99Probable potassium transport system protein kup OS... [more]
KUP_ACIAD1.613e-1925.66Probable potassium transport system protein kup OS... [more]
KUP1_BIFLO2.107e-1933.10Probable potassium transport system protein kup 1 ... [more]
KUP3_SINMW3.593e-1926.64Probable potassium transport system protein kup 3 ... [more]
KUP1_RHIL33.593e-1926.20Probable potassium transport system protein kup 1 ... [more]
KUP2_SINMW6.130e-1927.07Probable potassium transport system protein kup 2 ... [more]
KUP2_RHIME6.130e-1925.76Probable potassium transport system protein kup 2 ... [more]
KUP_METCA8.005e-1927.31Probable potassium transport system protein kup OS... [more]
KUP1_POLSJ8.005e-1932.87Probable potassium transport system protein kup 1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32014G04EF RVDevelop1 Citrus clementina cDNA clone C32014G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920914 ID=FC920914; Name=FC920914; organism=Citrus clementina; type=EST; length=683bp
GGAAGTCAAGCCATTATCACTGCAACTTTCTCGATAATAAAACAGTGCTC
TGCTTTGGGTTGCTTTCCAAGGGTCAAAATCATTCATACATCTTCCAAAA
TACATGGCCAGATTTACATTCCAGAGATCAACTGGACATTAATGCTTTTA
TGCTTGGCTATTACTGTTGGTTTTAGAGACACAAAACACATGGGGAACGC
ATCAGGTTTAGCAGTTATAACTGTCATGCTGGTAACAACCTGTCTAATGT
CTCTGGTCATTGTCTTATGCTGGCATCAGAGCATTTTCTTTGCCATTTGT
TTTATAATCTTCTTCGGCTCGGTTGAAGCACTTTACTTTTCAGCATCCCT
CATCAAGTTCTTAGAAGGGGCATGGGTTCCTATTGCCCTCTCATTTATTT
TTCTAGTTGCTATGTATGTTTGGCACTATGGCACACTCAAGAAATATGAG
TTTGATGTTCAAAATAAGGTCTCCATCAACTGGATTTTGAGCTTAGGCCC
GAATCTGGGAATTGTTAGGGTCCGGGGTATTGGCCTTATACATACAGAGC
TAGTTTCTGGAATCCCAGCAATTTTCTCTCACTTTGTCACCAACCTTCCA
GCTTTTCACCAGGTTGTGGTCTTCCTCTGCATCAAATCAGTTCCAGTGCC
ACATGTCAGACCAGACGAAAGGTTCCTGGTGGG
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