FC920914

Overview
NameFC920914
Unique NameFC920914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_CLOPS (Probable potassium transport system protein kup OS=Clostridium perfringens (strain SM101 / Type A) GN=kup PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.256e-13
Identity = 44/145 (30.34%), Postives = 79/145 (54.48%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVW---HY 429
            SQA+I+ +++++ +   L  FPR++ ++ S+   GQIY+P IN  L + C+AI + FR + +M  A GL++   ML+T+ L+    +L                 S+E  +  +S +KF +G +V + ++   L  MY+W   HY
Sbjct:  313 SQALISGSYTLVSEAIKLNLFPRLQCLYPSNS-KGQIYMPAINRILWIACIAIVLYFRSSDNMEAAYGLSITVTMLMTSILL-FNYLLKRKTPLPIALIILVFFSSLEFSFLISSAVKFEKGGFVSVLIALCILSIMYIWIKGHY 455          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_LEUMM (Probable potassium transport system protein kup OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=kup PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.848e-13
Identity = 43/154 (27.92%), Postives = 77/154 (50.00%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQN 465
            SQA+I+  ++++ +   L   PR++  + S +  GQ+YI  +NW L ++ L I   F+ + +M  A GL++   ML+TT L+    +    ++           G +E ++  ASL KFL G +  + +    L  M +W YG  ++     QN
Sbjct:  310 SQALISGAYTLVSEAINLKVIPRLRTFYPS-EARGQMYIGTVNWLLCIIGLIIVWAFQTSHNMEAAYGLSITITMLMTTLLL-YQFIKQEMKNKILAFFFVVIFGMIETVFLIASLGKFLHGGYATLIIMVAILSVMMIWFYGNKRREAISQQN 461          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_GEOMG (Probable potassium transport system protein kup 2 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=kup2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 54/221 (24.43%), Postives = 99/221 (44.80%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYE----FDVQN-KVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVP 651
            SQA+I+  FSI+ Q       P +K+ +TS+ +  QIYI  +NW+L++  + I + F+ ++++  A GLAV   M +T  +M+++     H +             ++ +Y +A+  K   G +  + L+ I L  M +W  G    Y      D+    +S   I + G N     + G GL      + +P    H +      ++  VF+ +     P
Sbjct:  303 SQALISGVFSIVYQGITTRILPLMKVDYTSTHLKSQIYIGSVNWSLLVAVIFIMLIFKKSENLAAAYGLAVTGTMFITGIMMTMIFS---HTTKKWKVPIALAVTLIDLVYLTANFHKLPHGGYWSLILASIPLAIMIIWTQGQKALYRALRPLDLDTFLLSFGQIYAKGHN-----IPGTGLFFVRETAVVPPYVIHCIIRSNIIYERNVFVSLNRSDEP 515          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_LACLS (Probable potassium transport system protein kup 2 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=kup2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 38/143 (26.57%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXG--SVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWH 426
            SQA+I+ +F+++ +   L   P  KI +    + GQ+YIP +N+ L +      + F+ ++HM  A  LA+   ML+TT L++  ++    +            G   +E  +F+ASL++F+ GA++ + ++   +  M++W+
Sbjct:  308 SQALISGSFTLVSEAIRLKLLPLFKIYYPGQTL-GQLYIPAVNFALWVTTSFFVLYFKTSEHMEAAYSLAITITMLMTTTLLTYFLI---QKGMPKIAIAFISIGLFCIEGSFFAASLVQFINGAYIVVLIALAIIFVMFIWN 446          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_LACLM (Probable potassium transport system protein kup 2 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=kup2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 38/143 (26.57%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXG--SVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWH 426
            SQA+I+ +F+++ +   L   P  KI +    + GQ+YIP +N+ L +      + F+ ++HM  A  LA+   ML+TT L++  ++    +            G   +E  +F+ASL++F+ GA++ + ++   +  M++W+
Sbjct:  308 SQALISGSFTLVSEAIRLKLLPLFKIYYPGQTL-GQLYIPAVNFALWVTTSFFVLYFKTSEHMEAAYSLAITITMLMTTTLLTYFLI---QKGTPKIAIAFISIGLFCIEGSFFAASLVQFINGAYIVVLIALAIIFVMFIWN 446          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_LACLA (Probable potassium transport system protein kup 2 OS=Lactococcus lactis subsp. lactis GN=kup2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.462e-12
Identity = 38/143 (26.57%), Postives = 77/143 (53.85%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXG--SVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWH 426
            SQA+I+ +F+++ +   L   P  KI +    + GQ+YIP +N+ L +      + F+ ++HM  A  LA+   ML+TT L++  ++    +            G   +E  +F+ASL++F+ GA++ + ++   +  M++W+
Sbjct:  308 SQALISGSFTLVSEAIRLKLLPLFKIYYPGQTL-GQLYIPAVNFALWVTTSFFVLYFKTSEHMEAAYSLAITITMLMTTTLLTYFLI---QKGTPKIAIAIISIGLFCIEGSFFAASLVQFINGAYIVVLIALAIIFVMFIWN 446          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_GEOSL (Probable potassium transport system protein kup 2 OS=Geobacter sulfurreducens GN=kup2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.494e-12
Identity = 55/222 (24.77%), Postives = 99/222 (44.59%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWH------YGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVP 651
            SQA+I+  FSI+ Q       P +K+ +TS+ +  QIYI  +NW+L++  + I + F+ ++++  A GLAV   M +T  +M+++       +             ++  Y +A+L K   G +  + L+ I L  M +W       Y +LK  + D    +S   I + G N     + G GL        +P    H +      ++  VF+ +     P
Sbjct:  302 SQALISGVFSIVYQGITTRILPLMKVDYTSTHLKSQIYIGSVNWSLLVAVIFIMILFQRSENLAAAYGLAVTGTMFITGIMMTMIFS---RTTKKWKVPIALAVTVIDFAYLTANLHKLPHGGYWSLVLASIPLAIMVIWTRGQRALYRSLKPLDLDT-FLLSYEQIYAKGHN-----IPGTGLFFVRETPVVPPYVIHCIIRSNIIYERNVFVSLTRTDEP 514          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP1_LACPL (Probable potassium transport system protein kup 1 OS=Lactobacillus plantarum GN=kup1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 40/146 (27.40%), Postives = 74/146 (50.68%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXG---SVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYG 432
            SQ++I+ +F+++ +   L  FPR+   +    + GQ+Y+P +NW L  +   + + F+ ++ M  A GLA+   ML+TT L+   +     Q            G   ++E ++  AS  KF  G +V + L+ +  + M VW+ G
Sbjct:  308 SQSLISGSFTLVSEAIRLKLFPRLLTTYPGKAV-GQMYLPVVNWGLWGVTSMLVIFFQTSERMEAAYGLAITLTMLMTTTLIYAFL----RQKRLPLIGAGLLTGFFATIEVIFLIASAAKFWHGGYVAVGLALLIFLVMAVWYRG 448          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_METAC (Probable potassium transport system protein kup OS=Methanosarcina acetivorans GN=kup PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 43/149 (28.86%), Postives = 72/149 (48.32%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYE 450
            SQA+I+  FSI+ Q       P +KI +TS K+  QIYI  +NW L++  L +   FRD+  +  A GLAV   M +T  +M+L+  L   +              ++ ++  ++  K   G +  I ++ I    + ++  G  K YE
Sbjct:  300 SQAMISGMFSIVYQGITTRIIPMLKIDYTSGKLRSQIYIGAVNWLLLISVLFMIFEFRDSHRLAAAYGLAVTGTMSITGLMMTLIFYL---KGRMFRSFVSLFVTVIDVVFLLSNTYKIPHGGYWSIVIAAIAFSLIIIYTSGQKKLYE 445          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_CYTH3 (Probable potassium transport system protein kup OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=kup PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.758e-11
Identity = 39/141 (27.66%), Postives = 73/141 (51.77%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWH 426
            SQA+I+ ++++I +   L  +P+V++ + S K  GQ++IP IN  L+  C+ + + F ++  M  A GLA+    L+TT L++  +++    S             +E  +  A+L KF  G +  +  S I    M +W+
Sbjct:  303 SQAMISGSYTLISEALRLNLWPKVRVKYPSVK-KGQLFIPSINLLLLAGCIFVVLWFGESSAMEGAYGLAINITFLMTTILLAYYLLIIKRISFIWVGLLILMYLIIEVSFLVANLEKFFHGGYFTLISSGILAFIMIIWY 442          
The following BLAST results are available for this feature:
BLAST of FC920914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
KUP_CLOPS2.256e-1330.34Probable potassium transport system protein kup OS... [more]
KUP_LEUMM3.848e-1327.92Probable potassium transport system protein kup OS... [more]
KUP2_GEOMG6.564e-1324.43Probable potassium transport system protein kup 2 ... [more]
KUP2_LACLS1.462e-1226.57Probable potassium transport system protein kup 2 ... [more]
KUP2_LACLM1.462e-1226.57Probable potassium transport system protein kup 2 ... [more]
KUP2_LACLA1.462e-1226.57Probable potassium transport system protein kup 2 ... [more]
KUP2_GEOSL2.494e-1224.77Probable potassium transport system protein kup 2 ... [more]
KUP1_LACPL1.238e-1127.40Probable potassium transport system protein kup 1 ... [more]
KUP_METAC2.112e-1128.86Probable potassium transport system protein kup OS... [more]
KUP_CYTH32.758e-1127.66Probable potassium transport system protein kup OS... [more]

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Properties
Property NameValue
Genbank descriptionC32014G04EF RVDevelop1 Citrus clementina cDNA clone C32014G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920914 ID=FC920914; Name=FC920914; organism=Citrus clementina; type=EST; length=683bp
GGAAGTCAAGCCATTATCACTGCAACTTTCTCGATAATAAAACAGTGCTC
TGCTTTGGGTTGCTTTCCAAGGGTCAAAATCATTCATACATCTTCCAAAA
TACATGGCCAGATTTACATTCCAGAGATCAACTGGACATTAATGCTTTTA
TGCTTGGCTATTACTGTTGGTTTTAGAGACACAAAACACATGGGGAACGC
ATCAGGTTTAGCAGTTATAACTGTCATGCTGGTAACAACCTGTCTAATGT
CTCTGGTCATTGTCTTATGCTGGCATCAGAGCATTTTCTTTGCCATTTGT
TTTATAATCTTCTTCGGCTCGGTTGAAGCACTTTACTTTTCAGCATCCCT
CATCAAGTTCTTAGAAGGGGCATGGGTTCCTATTGCCCTCTCATTTATTT
TTCTAGTTGCTATGTATGTTTGGCACTATGGCACACTCAAGAAATATGAG
TTTGATGTTCAAAATAAGGTCTCCATCAACTGGATTTTGAGCTTAGGCCC
GAATCTGGGAATTGTTAGGGTCCGGGGTATTGGCCTTATACATACAGAGC
TAGTTTCTGGAATCCCAGCAATTTTCTCTCACTTTGTCACCAACCTTCCA
GCTTTTCACCAGGTTGTGGTCTTCCTCTGCATCAAATCAGTTCCAGTGCC
ACATGTCAGACCAGACGAAAGGTTCCTGGTGGG
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