FC920914

Overview
NameFC920914
Unique NameFC920914
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length683
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURCH (Probable potassium transport system protein kup OS=Burkholderia cenocepacia (strain HI2424) GN=kup PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 64/227 (28.19%), Postives = 115/227 (50.66%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  +S+  Q   LG  PR+K++HTS    GQIY+P +NW L+ + L I VGF+ + ++  A G+AV   M++TT L  +V+V  W+ +            +++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T     +P    H + +    H+  +FL   +  +P+VR D+R
Sbjct:  316 SQAVISGAYSLTSQAIQLGYVPRMKVLHTSELAIGQIYVPVVNWLLLAVILCIVVGFKSSDNLAAAYGIAVTATMVITTVLACVVMVKVWNWNRLLVGAIIAVFLAIDLGFFGANLLKVAQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLEPFLQGLLAHPPH----RVSGTAIYLTGNDKLVPVSLLHNLKHNKVLHERTIFLTFVTRDIPYVRDDKR 538          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURCA (Probable potassium transport system protein kup OS=Burkholderia cenocepacia (strain AU 1054) GN=kup PE=3 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 8.831e-26
Identity = 64/227 (28.19%), Postives = 115/227 (50.66%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  +S+  Q   LG  PR+K++HTS    GQIY+P +NW L+ + L I VGF+ + ++  A G+AV   M++TT L  +V+V  W+ +            +++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T     +P    H + +    H+  +FL   +  +P+VR D+R
Sbjct:  316 SQAVISGAYSLTSQAIQLGYVPRMKVLHTSELAIGQIYVPVVNWLLLAVILCIVVGFKSSDNLAAAYGIAVTATMVITTVLACVVMVKVWNWNRLLVGAIIAVFLAIDLGFFGANLLKVAQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLEPFLQGLLAHPPH----RVSGTAIYLTGNDKLVPVSLLHNLKHNKVLHERTIFLTFVTRDIPYVRDDKR 538          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURXL (Probable potassium transport system protein kup OS=Burkholderia xenovorans (strain LB400) GN=kup PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 65/230 (28.26%), Postives = 115/230 (50.00%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  +S+  Q   LG  PR+KI+HTS    GQIY+P +NW L+ + L I + F+ + ++  A G+AV   M++TT L  +V+V  W+ +            +V+  +F A+L+K  EG W+P+ +  +    +  W+ G +   E    + +     +  +L+  P+    RV G  +  T   S +P    H + +    H+  +FL   +  +P+V   +R  V
Sbjct:  306 SQAVISGAYSLTSQAIQLGYVPRMKILHTSELAIGQIYVPVVNWMLLFIILCIVIAFKSSDNLAAAYGIAVTATMVITTILACVVMVKVWNWNKLLVALIIGVFMTVDLGFFGANLLKVEEGGWLPLGIGALLFFLLMTWYKGRMIVKERTAADGIPLMPFLQGLLAHPPH----RVSGTAIYLTGSDSLVPVSLLHNLKHNKVLHERTIFLTFVTRDIPYVNDADRVTV 531          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP2_LEGPH (Probable potassium transport system protein kup 2 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=kup2 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 70/224 (31.25%), Postives = 117/224 (52.23%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERF 675
            SQAII+A FSI+KQ S L   PR+KII+TS    G++Y+P IN+ L L   ++ V F+ + ++ +A G+AV   ML+TT L+ ++   CW+               +E  +F+ ++ K L G W+PI ++F+  V MY WH G  K  E   ++ +   +I+       I R  G+GL   +          H +     F + ++F+ IK    P++  +++F
Sbjct:  300 SQAIISAAFSILKQASLLNLIPRLKIIYTSKFEKGEVYLPLINFILALGTCSLVVIFKSSSNLADAYGIAVNLDMLITTVLVGIIAYYCWNWHAFKVMIFPLIL-VIELAFFAGNIPKLLTGGWIPILIAFLGFVVMYTWHCGFEKLRELHHRDALMDAFIIDELNQNKISRQSGMGLYIIDPYDCEGESLLHHLRLNRIFFENMIFVSIKIENKPYIPIEDKF 522          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURCM (Probable potassium transport system protein kup OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=kup PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 63/227 (27.75%), Postives = 114/227 (50.22%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  +S+  Q   LG  PR+K++HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L  +V+V  W+ +            +++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T     +P    H + +    H+  +FL   +  +P+VR D R
Sbjct:  315 SQAVISGAYSLTSQAIQLGYVPRMKVLHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTVLACVVMVKVWNWNRLLVGAIIAVFLAIDLGFFGANLLKVAQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLEPFLQGLLAHPPH----RVSGTAIYLTGNDKLVPVSLLHNLKHNKVLHERTIFLTFVTRDIPYVRDDTR 537          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_BURA4 (Probable potassium transport system protein kup OS=Burkholderia ambifaria (strain MC40-6) GN=kup PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 63/227 (27.75%), Postives = 114/227 (50.22%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVS----INWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDER 672
            SQA+I+  +S+  Q   LG  PR+K++HTS    GQIY+P +NW L+ + L I +GF+ + ++  A G+AV   M++TT L  +V+V  W+ +            +++  +F A+L+K  +G W+P+ +  +    +  W+ G     E    + +     +  +L+  P+    RV G  +  T     +P    H + +    H+  +FL   +  +P+VR D R
Sbjct:  315 SQAVISGAYSLTSQAIQLGYVPRMKVLHTSELAIGQIYVPVVNWLLLFVILCIVIGFKSSDNLAAAYGIAVTATMVITTVLACVVMVKVWNWNRLLVGAIIAIFLAIDLGFFGANLLKVAQGGWLPLGIGALLFFLLMTWYKGRHIVKERTAADGIPLEPFLQGLLAHPPH----RVSGTAIYLTGNDKLVPVSLLHNLKHNKVLHERTIFLTFVTRDIPYVRDDTR 537          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_YERPY (Low affinity potassium transport system protein kup OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=kup PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.967e-25
Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG  P ++IIHTS    GQIYIP INWTL L  + + +GF  + ++  A G+AV   M++T+ L   V    WH +             ++   FSA+++K   G W+P++L  +  + M  W            ++  S+  +++       VRV G  +  +  ++ IP    H + +    H+ VV L +++  VP+V   ER  +
Sbjct:  301 SQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPVINWTLYLAVVLVIIGFERSSNLAAAYGIAVTGTMVITSILFCTVAWKNWHWNRFLVAFLLMVLLIIDIPMFSANVLKLFSGGWLPLSLGLVMFIIMTTWKSERFSLLRRMHEHSNSLEAMIASLEKSPPVRVPGTAVYMSRAMNVIPFALLHNLKHNKVLHERVVLLTMRTDDVPYVHNVERVTI 526          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_YERPS (Low affinity potassium transport system protein kup OS=Yersinia pseudotuberculosis GN=kup PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.967e-25
Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG  P ++IIHTS    GQIYIP INWTL L  + + +GF  + ++  A G+AV   M++T+ L   V    WH +             ++   FSA+++K   G W+P++L  +  + M  W            ++  S+  +++       VRV G  +  +  ++ IP    H + +    H+ VV L +++  VP+V   ER  +
Sbjct:  301 SQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPVINWTLYLAVVLVIIGFERSSNLAAAYGIAVTGTMVITSILFCTVAWKNWHWNRFLVAFLLMVLLIIDIPMFSANVLKLFSGGWLPLSLGLVMFIIMTTWKSERFSLLRRMHEHSNSLEAMIASLEKSPPVRVPGTAVYMSRAMNVIPFALLHNLKHNKVLHERVVLLTMRTDDVPYVHNVERVTI 526          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_YERPP (Low affinity potassium transport system protein kup OS=Yersinia pestis (strain Pestoides F) GN=kup PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.967e-25
Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG  P ++IIHTS    GQIYIP INWTL L  + + +GF  + ++  A G+AV   M++T+ L   V    WH +             ++   FSA+++K   G W+P++L  +  + M  W            ++  S+  +++       VRV G  +  +  ++ IP    H + +    H+ VV L +++  VP+V   ER  +
Sbjct:  301 SQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPVINWTLYLAVVLVIIGFERSSNLAAAYGIAVTGTMVITSILFCTVAWKNWHWNRFLVVFLLMVLLIIDIPMFSANVLKLFSGGWLPLSLGLVMFIIMTTWKSERFSLLRRMHEHSNSLEAMIASLEKSPPVRVPGTAVYMSRAMNVIPFALLHNLKHNKVLHERVVLLTMRTDDVPYVHNVERVTI 526          
BLAST of FC920914 vs. ExPASy Swiss-Prot
Match: KUP_YERPN (Low affinity potassium transport system protein kup OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=kup PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.967e-25
Identity = 66/226 (29.20%), Postives = 111/226 (49.12%), Query Frame = 1
Query:    4 SQAIITATFSIIKQCSALGCFPRVKIIHTSSKIHGQIYIPEINWTLMLLCLAITVGFRDTKHMGNASGLAVITVMLVTTCLMSLVIVLCWHQSXXXXXXXXXXXGSVEALYFSASLIKFLEGAWVPIALSFIFLVAMYVWHYGTLKKYEFDVQNKVSINWILSLGPNLGIVRVRGIGLIHTELVSGIPAIFSHFVTNLPAFHQVVVFLCIKSVPVPHVRPDERFLV 681
            SQA+I+  FS+ +Q   LG  P ++IIHTS    GQIYIP INWTL L  + + +GF  + ++  A G+AV   M++T+ L   V    WH +             ++   FSA+++K   G W+P++L  +  + M  W            ++  S+  +++       VRV G  +  +  ++ IP    H + +    H+ VV L +++  VP+V   ER  +
Sbjct:  301 SQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPVINWTLYLAVVLVIIGFERSSNLAAAYGIAVTGTMVITSILFCTVAWKNWHWNRFLVVFLLMVLLIIDIPMFSANVLKLFSGGWLPLSLGLVMFIIMTTWKSERFSLLRRMHEHSNSLEAMIASLEKSPPVRVPGTAVYMSRAMNVIPFALLHNLKHNKVLHERVVLLTMRTDDVPYVHNVERVTI 526          
The following BLAST results are available for this feature:
BLAST of FC920914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 340
Match NameE-valueIdentityDescription
KUP_BURCH8.831e-2628.19Probable potassium transport system protein kup OS... [more]
KUP_BURCA8.831e-2628.19Probable potassium transport system protein kup OS... [more]
KUP_BURXL1.153e-2528.26Probable potassium transport system protein kup OS... [more]
KUP2_LEGPH1.153e-2531.25Probable potassium transport system protein kup 2 ... [more]
KUP_BURCM1.506e-2527.75Probable potassium transport system protein kup OS... [more]
KUP_BURA41.506e-2527.75Probable potassium transport system protein kup OS... [more]
KUP_YERPY1.967e-2529.20Low affinity potassium transport system protein ku... [more]
KUP_YERPS1.967e-2529.20Low affinity potassium transport system protein ku... [more]
KUP_YERPP1.967e-2529.20Low affinity potassium transport system protein ku... [more]
KUP_YERPN1.967e-2529.20Low affinity potassium transport system protein ku... [more]

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Properties
Property NameValue
Genbank descriptionC32014G04EF RVDevelop1 Citrus clementina cDNA clone C32014G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920914 ID=FC920914; Name=FC920914; organism=Citrus clementina; type=EST; length=683bp
GGAAGTCAAGCCATTATCACTGCAACTTTCTCGATAATAAAACAGTGCTC
TGCTTTGGGTTGCTTTCCAAGGGTCAAAATCATTCATACATCTTCCAAAA
TACATGGCCAGATTTACATTCCAGAGATCAACTGGACATTAATGCTTTTA
TGCTTGGCTATTACTGTTGGTTTTAGAGACACAAAACACATGGGGAACGC
ATCAGGTTTAGCAGTTATAACTGTCATGCTGGTAACAACCTGTCTAATGT
CTCTGGTCATTGTCTTATGCTGGCATCAGAGCATTTTCTTTGCCATTTGT
TTTATAATCTTCTTCGGCTCGGTTGAAGCACTTTACTTTTCAGCATCCCT
CATCAAGTTCTTAGAAGGGGCATGGGTTCCTATTGCCCTCTCATTTATTT
TTCTAGTTGCTATGTATGTTTGGCACTATGGCACACTCAAGAAATATGAG
TTTGATGTTCAAAATAAGGTCTCCATCAACTGGATTTTGAGCTTAGGCCC
GAATCTGGGAATTGTTAGGGTCCGGGGTATTGGCCTTATACATACAGAGC
TAGTTTCTGGAATCCCAGCAATTTTCTCTCACTTTGTCACCAACCTTCCA
GCTTTTCACCAGGTTGTGGTCTTCCTCTGCATCAAATCAGTTCCAGTGCC
ACATGTCAGACCAGACGAAAGGTTCCTGGTGGG
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