FC920919

Overview
NameFC920919
Unique NameFC920919
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14609 contig Ccv1_Contig14609:344..1054. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_CAPCH (Caffeic acid 3-O-methyltransferase OS=Capsicum chinense GN=COMT PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.320e-51
Identity = 99/210 (47.14%), Postives = 141/210 (67.14%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITLQPSLPSTPILR 672
            D++F +A QLA  ++LPM ++   EL + EI+ K GPGA +  S++AAQL TKN +AP+MLDR+ RLLA+YSV+ C+L         RLYSL  V K+   N DGV + P++ + QDKV ++SW  L DA+L+GG+PFN+A+G+  FEY G DP+FNK FN  M ++T+L M  ILE Y GF+ +  +VDVGG  G T+   +   P ++
Sbjct:   13 DEAFVFAMQLASASVLPMVLKATVELDLLEIMAKSGPGAFISPSELAAQLPTKNPEAPVMLDRMFRLLATYSVLNCTLRTLPDGRVERLYSLAPVCKFLTKNGDGVSIAPILLMNQDKVLMESWYHLTDAVLDGGVPFNKAYGMTTFEYHGTDPRFNKVFNCGMSDHTTLSMKKILEDYTGFEGLNSIVDVGGGTGATVNMIVSKYPSIK 222          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_PRUDU (Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.017e-51
Identity = 103/210 (49.05%), Postives = 142/210 (67.62%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLD--ASG-ARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITLQPSLPSTPILR 672
            +++  +A QLA  ++LPM ++   EL + EI+ K GPG  L  +DIA+QL TKN DAP+MLDR+LRLLASYS++  SL   A G   RLY L  V K+   N++GV + PL  + QDKV L+SW  LKDA+LEGGIPFN+A+G+  FEY G DP+FNK FN  M +++++ M  ILE+YKGF+ +  +VDVGG  G  L   +   P ++
Sbjct:   17 EEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGVFLSPTDIASQLPTKNPDAPVMLDRMLRLLASYSILTYSLRTLADGKVERLYGLGPVCKFLTKNEEGVSIAPLCLMNQDKVLLESWYHLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGFEGLTSVVDVGGGTGAVLNMIVSKYPSIK 226          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGL (Caffeic acid 3-O-methyltransferase (Fragment) OS=Eucalyptus globulus GN=COMT1 PE=3 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 5.017e-51
Identity = 101/205 (49.27%), Postives = 139/205 (67.80%), Query Frame = 1
Query:   67 YATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSL---DASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITLQPSLPSTPILR 672
            +A QLA  ++LP  +    EL + EI+ + GPGA L   ++A+QL T+N DAP+MLDRI RLLASYSV+ C+L         RLY L  + K+ V N+DGV L PL  I QD+VFL+SW  +KDAILEGGIPF++AHG+  F+Y G DP+FNK FN AM ++++++M  ILE+Y GF+ +K +VDVGG  G  L   +   P ++
Sbjct:    4 FAMQLATASVLPAVLTAAIELDLLEIMARAGPGAYLTPGEVASQLPTQNPDAPVMLDRIFRLLASYSVLTCTLCDLPEGKVERLYGLAPLCKFLVKNEDGVSLAPLRLIDQDRVFLESWYYMKDAILEGGIPFHKAHGMTAFDYPGTDPRFNKIFNRAMSDHSTIMMKKILETYNGFEGLKTVVDVGGGTGAILNMIVAKYPSIK 208          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_ZINEL (Caffeic acid 3-O-methyltransferase OS=Zinnia elegans PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 1.938e-50
Identity = 94/200 (47.00%), Postives = 133/200 (66.50%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQL-LTKNKDAPMMLDRILRLLASYSVVECSLDASG---ARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITL 639
            DQ+F +A QLA  ++LPM ++T  EL + E + K GP   + +S++ AQL    N +AP+M+DRI  LLASYSV+ C+L  +    A R Y L  V K+ + N  GV L PL+ + QDKV ++SW  LKD +L+GGIPFN+A+G+  FEY G D +FNK FN+ M+N++++ M  I+E Y GF  +K LVDVGG  G +L
Sbjct:    7 DQAFLFAMQLASASVLPMVLKTAIELDLLETIAKAGPHGSVSSSELVAQLPKVNNPEAPVMIDRICSLLASYSVLTCTLKETADGCAERFYGLAPVCKFLIKNDAGVSLAPLLLMNQDKVLMESWYYLKDPVLDGGIPFNKAYGMSAFEYHGKDQRFNKVFNSGMFNHSTMTMKKIVELYNGFSGLKTLVDVGGGTGASL 206          

HSP 2 Score: 31.9574 bits (71), Expect = 1.938e-50
Identity = 14/22 (63.64%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  645 ITTKYPYIKGINFDQPHVIDHA 710
            IT+K+  +KGINFD PHVI  A
Sbjct:  209 ITSKHKSLKGINFDLPHVIADA 230          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_MEDSA (Caffeic acid 3-O-methyltransferase OS=Medicago sativa PE=1 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.247e-50
Identity = 97/210 (46.19%), Postives = 143/210 (68.10%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDASG---ARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITLQPSLPSTPILR 672
            +++  +A QLA  ++LPM +++  EL + EI+ K GPGA++   +IA+QL T N DAP+MLDR+LRLLA Y ++ CS+        +RLY L +V+KY V N+DGV +  L  + QDKV ++SW  LKDA+L+GGIPFN+A+G+  FEY G DP+FNK FN  M +++++ M  ILE+Y GF+ +K LVDVGG  G  +   +   P ++
Sbjct:   17 EEANLFAMQLASASVLPMILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIK 226          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_EUCGU (Caffeic acid 3-O-methyltransferase OS=Eucalyptus gunnii GN=OMT PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.247e-50
Identity = 99/210 (47.14%), Postives = 141/210 (67.14%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSL---DASGARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITLQPSLPSTPILR 672
            +++  +A QLA  ++LPM ++   EL + EI+ K GPGA L   ++AAQL T+N +AP+MLDRI RLLASYSV+ C+L         RLY L  V K+ V N+DGV +  L  + QDK+ ++SW  LKDA+LEGGIPFN+A+G+  FEY G DP+FNK FN  M +++++ M  ILE+YKGF+ ++ +VDVGG  G  L   +   P ++
Sbjct:   18 EEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPGEVAAQLPTQNPEAPVMLDRIFRLLASYSVLTCTLRNLPDGKVERLYGLAPVCKFLVKNEDGVSIAALNLMNQDKILMESWYYLKDAVLEGGIPFNKAYGMTAFEYHGTDPRFNKIFNRGMSDHSTITMKKILETYKGFEGLETVVDVGGGTGAVLSMIVAKYPSMK 227          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_ROSCH (Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.133e-49
Identity = 96/210 (45.71%), Postives = 140/210 (66.67%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAKLCASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITLQPSLPSTPILR 672
            +++  +A QLA  ++LPM ++   EL + EI+ K GPGA L  +D+A+QL TKN +AP+MLDR+LRLLASYS++  SL         RLY L  V K+   N+DGV +  L  + QDKV ++SW  LKDA+L+GGIPFN+A+G+  F+Y G DP+FNK FN  M +++++ M  ILE+YKGF+ +  +VDVGG  G  +   +   P ++
Sbjct:   17 EEANLFAMQLASASVLPMVLKAAIELDLLEIMAKAGPGAFLSPNDLASQLPTKNPEAPVMLDRMLRLLASYSILTYSLRTLPDGKVERLYGLGPVCKFLTKNEDGVSIAALCLMNQDKVLVESWYHLKDAVLDGGIPFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETYKGFEGLTSIVDVGGGTGAVVNMIVSKYPSIK 226          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_SACOF (Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 2.284e-48
Identity = 90/201 (44.78%), Postives = 129/201 (64.18%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAK-LCASDIAAQL--LTKNKDAPMMLDRILRLLASYSVVECSLDASGAR--RLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITL 639
            +++  YA QLA  ++LPM ++   ELG+ E+L    P  K L   ++ A+L     N DA  M+DR+LRLLASY VV+C ++    +  R YS   V K+  PN+DGV +  L  + QDKV ++SW  LKDA+L+GGIPFN+A+G+  FEY G DP+FN+ FN  M N++ ++   +LE Y GF+ +  LVDVGG +G TL
Sbjct:   14 EEACMYAMQLASASILPMTLKNALELGLLEVLQAEAPAGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPVGKWLTPNEDGVSMAALTLMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNRVFNEGMKNHSVIITKKLLEFYTGFEGVSTLVDVGGGIGATL 214          

HSP 2 Score: 36.5798 bits (83), Expect = 2.284e-48
Identity = 16/23 (69.57%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  642 AITTKYPYIKGINFDQPHVIDHA 710
            AIT+ +P IKGINFD PHVI  A
Sbjct:  216 AITSHHPQIKGINFDLPHVISEA 238          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_CLABR (Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.192e-48
Identity = 101/213 (47.42%), Postives = 137/213 (64.32%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKV---GPGAKLCASDIAAQLLTKNKDAPMMLDRILRLLASYSVVECSLDA---SGARRLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITLQPSLPSTPILR 672
            +++  +A QLA  ++LPM ++   EL + EI+ K    G GA +  ++IAAQL T N DAP+MLDR+LRLLASYSVV CSL         RLY L  V K+   N+DGV L PL  + QDKV ++SW  LKDAIL+GGIPFN+A+G+  FEY G DP+FNK FN  M +++++ M  I E Y GF+ +  +VDVGG  G  L   +   P ++
Sbjct:   19 EEANLFAMQLASASVLPMVLKAAIELDVLEIMAKSIPHGSGAYISPAEIAAQLPTTNPDAPVMLDRVLRLLASYSVVTCSLRELPDGKVERLYGLAPVCKFLTKNEDGVSLAPLCLMNQDKVLMESWYYLKDAILDGGIPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIK 231          
BLAST of FC920919 vs. ExPASy Swiss-Prot
Match: COMT1_MAIZE (Caffeic acid 3-O-methyltransferase OS=Zea mays PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 3.504e-46
Identity = 88/203 (43.35%), Postives = 127/203 (62.56%), Query Frame = 1
Query:   52 DQSFAYATQLAMGTMLPMAIQTVYELGIFEILDKVGPGAK--LCASDIAAQLLTKNKD---APMMLDRILRLLASYSVVECSLDASGAR--RLYSLNSVSKYYVPNKDGVLLGPLIQIVQDKVFLKSWSQLKDAILEGGIPFNRAHGVHVFEYAGLDPKFNKHFNTAMYNYTSLVMSNILESYKGFDNIKQLVDVGGSLGITL 639
            +++  YA QLA  ++LPM ++   ELG+ E+L K   G K  L   ++ A++     D   A  M+DR+LRLLASY VV C ++    R  R YS   V K+  PN+DGV +  L  + QDKV ++SW  LKDA+L+GGIPFN+A+G+  FEY G D +FN+ FN  M N++ ++   +L+ Y GF+ +  LVDVGG +G TL
Sbjct:   14 EEACMYAMQLASSSILPMTLKNAIELGLLEVLQKEAGGGKAALAPEEVVARMPAAPSDPAAAAAMVDRMLRLLASYDVVRCQMEDRDGRYERRYSAAPVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMTAFEYHGTDARFNRVFNEGMKNHSVIITKKLLDFYTGFEGVSTLVDVGGGVGATL 216          

HSP 2 Score: 36.5798 bits (83), Expect = 3.504e-46
Identity = 14/23 (60.87%), Postives = 19/23 (82.61%), Query Frame = 3
Query:  642 AITTKYPYIKGINFDQPHVIDHA 710
            AIT+++P+I G+NFD PHVI  A
Sbjct:  218 AITSRHPHISGVNFDLPHVISEA 240          
The following BLAST results are available for this feature:
BLAST of FC920919 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
COMT1_CAPCH1.320e-5147.14Caffeic acid 3-O-methyltransferase OS=Capsicum chi... [more]
COMT1_PRUDU5.017e-5149.05Caffeic acid 3-O-methyltransferase OS=Prunus dulci... [more]
COMT1_EUCGL5.017e-5149.27Caffeic acid 3-O-methyltransferase (Fragment) OS=E... [more]
COMT1_ZINEL1.938e-5047.00Caffeic acid 3-O-methyltransferase OS=Zinnia elega... [more]
COMT1_MEDSA4.247e-5046.19Caffeic acid 3-O-methyltransferase OS=Medicago sat... [more]
COMT1_EUCGU4.247e-5047.14Caffeic acid 3-O-methyltransferase OS=Eucalyptus g... [more]
COMT1_ROSCH6.133e-4945.71Caffeic acid 3-O-methyltransferase OS=Rosa chinens... [more]
COMT1_SACOF2.284e-4844.78Caffeic acid 3-O-methyltransferase OS=Saccharum of... [more]
COMT1_CLABR5.192e-4847.42Caffeic acid 3-O-methyltransferase OS=Clarkia brew... [more]
COMT1_MAIZE3.504e-4643.35Caffeic acid 3-O-methyltransferase OS=Zea mays PE=... [more]

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Properties
Property NameValue
Genbank descriptionC32014G09EF RVDevelop1 Citrus clementina cDNA clone C32014G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920919 ID=FC920919; Name=FC920919; organism=Citrus clementina; type=EST; length=710bp
TAGGAGAAATTCTCGAAACTTAAAAAGGATTCTATAGTTGATGGAGAAAG
AGACCAAAGCTTTGCATATGCTACTCAATTGGCGATGGGTACAATGCTAC
CCATGGCCATTCAAACGGTGTATGAGCTAGGCATTTTCGAGATCCTAGAC
AAAGTTGGTCCTGGTGCAAAGCTCTGTGCTTCAGATATTGCAGCCCAATT
GCTCACCAAGAACAAAGACGCACCCATGATGCTGGATCGGATTCTCAGGC
TTCTGGCTAGCTACAGCGTTGTTGAATGCTCACTTGATGCTTCTGGTGCC
CGGAGACTATATAGTTTGAATTCTGTCTCCAAATACTATGTGCCTAACAA
AGATGGCGTCTTACTAGGACCCCTAATACAAATAGTTCAGGACAAGGTCT
TTCTGAAGAGCTGGTCCCAACTCAAAGATGCTATTCTTGAAGGAGGAATT
CCATTTAATCGAGCCCATGGAGTGCATGTATTTGAGTACGCAGGATTGGA
CCCTAAGTTCAATAAACATTTTAACACAGCAATGTATAACTATACCTCTC
TGGTTATGAGCAACATTCTTGAATCTTACAAGGGTTTCGACAACATCAAG
CAACTGGTCGATGTTGGTGGTAGTCTCGGCATTACTCTTCAGCCATCACT
ACCAAGTACCCCTATATTAAGGGCATCAATTTCGACCAGCCTCATGTTAT
TGACCATGCC
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