FC920922

Overview
NameFC920922
Unique NameFC920922
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length618
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10165 contig Ccv1_Contig10165:62..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_RAT (40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.150e-53
Identity = 106/191 (55.50%), Postives = 145/191 (75.92%), Query Frame = 1
Query:    1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_MOUSE (40S ribosomal protein S7 OS=Mus musculus GN=Rps7 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.150e-53
Identity = 106/191 (55.50%), Postives = 145/191 (75.92%), Query Frame = 1
Query:    1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_HUMAN (40S ribosomal protein S7 OS=Homo sapiens GN=RPS7 PE=1 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.150e-53
Identity = 106/191 (55.50%), Postives = 145/191 (75.92%), Query Frame = 1
Query:    1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_FELCA (40S ribosomal protein S7 OS=Felis catus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.150e-53
Identity = 106/191 (55.50%), Postives = 145/191 (75.92%), Query Frame = 1
Query:    1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_DANRE (40S ribosomal protein S7 OS=Danio rerio GN=rps7 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.150e-53
Identity = 104/191 (54.45%), Postives = 146/191 (76.44%), Query Frame = 1
Query:    1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            MF+T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L+I  A +++V G+RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLT VHDA+LED+V+P+EIVGKR+R +LD S++IK+ LD  ++NN E+K+E+F+GVY+KLTGKDV+F++P
Sbjct:    1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELHITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTNVHDAILEDLVFPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKVETFAGVYKKLTGKDVIFEFP 190          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_BOVIN (40S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.150e-53
Identity = 106/191 (55.50%), Postives = 145/191 (75.92%), Query Frame = 1
Query:    1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            MF++  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDV F++P
Sbjct:    1 MFSSSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRTKNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVNFEFP 190          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_TAKRU (40S ribosomal protein S7 OS=Takifugu rubripes GN=rps7 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.114e-53
Identity = 105/191 (54.97%), Postives = 146/191 (76.44%), Query Frame = 1
Query:    1 MFTTKKKIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            MF+T  KI K    +P EFE  ++QAL +LE  N +LK+ L++L I  A +++V G+RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  +    RPRSRTLT+VHDA+LED+V+P+EIVGKR+R ++D S++IK+ LD  ++NN E+K+E+FSGVY+KLTGKDVVF++P
Sbjct:    1 MFSTSAKIVKPNGEKPDEFESGISQALLELE-MNSDLKAQLRELNITAAKEIEVGGSRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRSKNKQKRPRSRTLTSVHDAILEDLVFPSEIVGKRIRVKMDSSRLIKVHLDKAQQNNVEHKVETFSGVYKKLTGKDVVFEFP 190          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_ANOGA (40S ribosomal protein S7 OS=Anopheles gambiae GN=RpS7 PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.049e-48
Identity = 96/185 (51.89%), Postives = 141/185 (76.22%), Query Frame = 1
Query:   19 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            K+ K  + EP  FE  + QA+ +LE  N +LK  L+DLYI +A +++ + N+KAI++YVP   +KA++K+ +RLVRELEKKFSGK VV IA RRI+  P +G    +  +RPRSRTLTAV+DA+LED+V+PAE+VGKR+R +LDGS++IK+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:    6 KVIKAGNGEPDAFETQIGQAILELE-MNSDLKPQLRDLYITRAREVEFN-NKKAIIIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVVFIAERRILPKPMRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFASVYKKLTGRDVTFEFP 188          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_SCHPO (40S ribosomal protein S7 OS=Schizosaccharomyces pombe GN=rps7 PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 1.369e-48
Identity = 96/184 (52.17%), Postives = 134/184 (72.83%), Query Frame = 1
Query:   19 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV--QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI 564
            KI K   ++PTE +  VAQ L+DLE++++++  +L+ L I  A +++V G +KAIVV+VP  L KA+ K  +RL RELEKKF+ + V+ IA RRI+  P + S V  +RPRSRTLTAVH+A+LED+V+P EI+GKR R   DG K IK+FLD ++ N  +YKL SFS VY KLTGK+V F++P+
Sbjct:    6 KIVKRSSSQPTETDLLVAQCLYDLESSSKDMAKELRPLQITSAREVEVGGGKKAIVVFVPQPLLKAFHKCQARLTRELEKKFADRHVIFIAQRRILPKPGRKSRVTQKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRDANTVDYKLGSFSSVYHKLTGKNVTFEFPV 189          
BLAST of FC920922 vs. ExPASy Swiss-Prot
Match: RS7_CULQU (40S ribosomal protein S7 OS=Culex quinquefasciatus GN=RpS7 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.336e-48
Identity = 96/185 (51.89%), Postives = 141/185 (76.22%), Query Frame = 1
Query:   19 KIQKDKDAEPTEFEETVAQALFDLENTNQELKSDLKDLYINQAIQMDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYP 561
            K+ K   AEP  FE  + QA+ +LE  N +LK  L+DL+I +A +++ + N+KAIV+YVP   +KA++K+ +RLVRELEKKFSGK VV I  RRI+  P++G    +  +RPRSRTLTAV+DA+LED+V+PAE+VGKR+R +LDGS++IK+ LD  ++   E+K+++F+ VY+KLTG+DV F++P
Sbjct:    6 KVIKSGGAEPDAFEGQIGQAILELE-MNSDLKPQLRDLHITRAREIEFN-NKKAIVIYVPVPKQKAFQKVQTRLVRELEKKFSGKHVVFIGERRILPKPQRGRRDPNKQKRPRSRTLTAVYDAILEDLVFPAEVVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFTSVYKKLTGRDVTFEFP 188          
The following BLAST results are available for this feature:
BLAST of FC920922 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 29
Match NameE-valueIdentityDescription
RS7_RAT3.150e-5355.5040S ribosomal protein S7 OS=Rattus norvegicus GN=R... [more]
RS7_MOUSE3.150e-5355.5040S ribosomal protein S7 OS=Mus musculus GN=Rps7 P... [more]
RS7_HUMAN3.150e-5355.5040S ribosomal protein S7 OS=Homo sapiens GN=RPS7 P... [more]
RS7_FELCA3.150e-5355.5040S ribosomal protein S7 OS=Felis catus GN=RPS7 PE... [more]
RS7_DANRE3.150e-5354.4540S ribosomal protein S7 OS=Danio rerio GN=rps7 PE... [more]
RS7_BOVIN3.150e-5355.5040S ribosomal protein S7 OS=Bos taurus GN=RPS7 PE=... [more]
RS7_TAKRU4.114e-5354.9740S ribosomal protein S7 OS=Takifugu rubripes GN=r... [more]
RS7_ANOGA1.049e-4851.8940S ribosomal protein S7 OS=Anopheles gambiae GN=R... [more]
RS7_SCHPO1.369e-4852.1740S ribosomal protein S7 OS=Schizosaccharomyces po... [more]
RS7_CULQU2.336e-4851.8940S ribosomal protein S7 OS=Culex quinquefasciatus... [more]

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Properties
Property NameValue
Genbank descriptionC32014G12EF RVDevelop1 Citrus clementina cDNA clone C32014G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920922 ID=FC920922; Name=FC920922; organism=Citrus clementina; type=EST; length=618bp
ATGTTCACGACTAAGAAGAAAATCCAAAAAGACAAGGATGCCGAACCTAC
TGAGTTTGAGGAGACAGTTGCCCAGGCACTGTTTGATTTGGAGAATACCA
ACCAGGAGCTTAAAAGTGACTTGAAAGATCTTTACATTAATCAAGCCATT
CAAATGGATGTTTCTGGAAACCGCAAGGCAATTGTTGTCTATGTGCCTTA
CAGATTGAGGAAGGCTTATCGGAAGATTCATTCTCGCCTTGTGAGAGAGC
TGGAGAAGAAATTCAGTGGCAAGGATGTTGTACTCATTGCCACCCGAAGG
ATAGTCAGGCCACCAAAGAAAGGCTCTGCTGTTCAGAGACCTCGCAGTCG
CACACTCACAGCTGTTCATGATGCCATGCTTGAAGATGTAGTTTACCCAG
CTGAGATTGTTGGAAAACGTGTCAGATACCGTCTCGATGGATCCAAAATA
ATCAAGATTTTCTTGGATCCAAAGGAGAGGAACAACACGGAGTACAAGTT
GGAGTCTTTTTCAGGGGTTTACAGAAAGCTTACCGGCAAAGACGTGGTTT
TTGATTATCCAATTACAGATGCCTGAAGAGTTGTTGCAGACGATCATTTG
TGTTTGTCACTGTTTATT
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