FC920926

Overview
NameFC920926
Unique NameFC920926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920926_ssr674 microsatellite FC920926_ssr674:674..685. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:12..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RRAS_HUMAN (Ras-related protein R-Ras OS=Homo sapiens GN=RRAS PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 57/182 (31.32%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKI-----RFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQV-KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAP 624
            KLV+VG GG GK+    + +   F   Y+PTI       D +T    +     R    DTAGQE+FG +R+ Y   G   +++F +  R ++  V      + RV   ++ P+VL GNK D+++ RQV +++   F    ++ Y+E SAK   N ++ F  L R +          SP  AP
Sbjct:   31 KLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE------DSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQELPPSPPSAP 206          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RB33B_PONAB (Ras-related protein Rab-33B OS=Pongo abelii GN=RAB33B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKLAGDPNLHFVESP 612
            FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P+W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+   N + E  F+ LA KL     L   + P
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEE-CKQHLLASDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQPP 211          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RB33B_HUMAN (Ras-related protein Rab-33B OS=Homo sapiens GN=RAB33B PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 54/179 (30.17%), Postives = 90/179 (50.28%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKLAGDPNLHFVESP 612
            FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P+W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+   N + E  F+ LA KL     L   + P
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVEIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPSWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQPP 211          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RB11B_DICDI (Ras-related protein Rab-11B OS=Dictyostelium discoideum GN=rab11B PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 51/162 (31.48%), Postives = 83/162 (51.23%), Query Frame = 1
Query:   82 QTVDYPSF-KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPF 555
            +T++Y    K+V++GD G GK+  + R+   EF      TIGVE        +   I+   WDTAGQEK+  + + YY     A+I++++  R ++ N+  W +       ++  I+L GNK D+K  R+V   +   F  K  +Q+ E SA  + N E  F
Sbjct:    4 KTIEYDYLCKIVVIGDSGVGKSNLLSRYNKNEFSVGKLSTIGVEFSTKTLKIDNKLIKLQLWDTAGQEKYNSITESYYKGAIGALIVYNIADRNSFNNLEKWLKKFRENAHQDYGIMLVGNKSDLKEYREVSTLEGKQFAEKHYMQFIETSALDSNNVETAF 165          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 54/172 (31.40%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTI----------GVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV---TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            KLVIVGDGG GK+    +    +F  +Y+PTI            EV+ LD             DTAGQE++  +RD Y   G+  +I++ + +R +++ V T+   + RV      PIV+ GNK D+ ++  K   +      +     + E SAKS  N E+ F  L R++
Sbjct:    6 KLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYRKQVNIDEEVYMLDIL-----------DTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREI 166          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RACC_DICDI (Rho-related protein racC OS=Dictyostelium discoideum GN=racC PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 49/166 (29.52%), Postives = 84/166 (50.60%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPT-WHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVT-------FHRKKNLQYYEISAKSNYNFEKPF 555
            KLV++GDG  GKT  +  +    F + Y PT+  + + ++       I    WDTAGQE++  LR   Y +    +I F +T  ++++NV T W+ ++   C  +P +L G K+D ++        +Q   K +T         R K ++Y E SAK++ N ++ F
Sbjct:    8 KLVVIGDGAVGKTCLLISYANNRFPEDYIPTV-FDNYVVNLTAGDRNIELGLWDTAGQEEYDKLRPLSYANANVFLICFSITNPVSFENVYTKWYPEVMHFCPEVPQILVGTKLDTRDDRGVLDKLQQTGHKPITTEQGNDLARRIKAIKYMECSAKTSQNLKQVF 172          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB3D_MOUSE (Ras-related protein Rab-3D OS=Mus musculus GN=Rab3d PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 44/161 (27.33%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 555
            Q  DY  FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ +V   +       +L  +++E SAK N N ++ F
Sbjct:   17 QNFDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB3D_HUMAN (Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3D PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 44/161 (27.33%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   82 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL--QYYEISAKSNYNFEKPF 555
            Q  DY  FKL+++G+   GKT+F+ R+    F   +  T+G++      + +  +I+   WDTAGQE++  +   YY      ++M+D+  + ++  V  W   +     +N  ++L GNK D+++ +V   +       +L  +++E SAK N N ++ F
Sbjct:   17 QNFDY-MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.136e-15
Identity = 47/163 (28.83%), Postives = 86/163 (52.76%), Query Frame = 1
Query:  100 SFKLVIVGDGGTGKTTFVKRHLTGEF-EKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVD-VKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            +FK+++VGD G GKT  + R   G F    +  T+G++        +  K++   WDTAGQE+F  +   YY      ++++DVT + ++ ++  W  ++     +++ ++L GNKVD  + R VK +      +   L + E SAK+  N +  F  +A++L
Sbjct:   63 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RECG_ENTHI (Rho-related protein racG OS=Entamoeba histolytica GN=RACG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15
Identity = 45/126 (35.71%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVP-TWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQV 480
            KLVIVGDG  GKT  +  + T  F  +Y PT+  E +      +  KI    WDTAGQE +  LR   Y      ++ F V A  +Y+NV   W  ++ + C N+PI+L G K+D+++   + K++
Sbjct:    5 KLVIVGDGAVGKTCMLISYTTNAFPNEYIPTV-FENYNSSLVVDDVKINLGLWDTAGQEDYDRLRPLSYPSTDVFLVCFSVIAPASYENVEGKWKPEIDQHCPNVPIILVGTKIDIRDDPEQVKRL 129          
The following BLAST results are available for this feature:
BLAST of FC920926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRAS_HUMAN7.136e-1531.32Ras-related protein R-Ras OS=Homo sapiens GN=RRAS ... [more]
RB33B_PONAB7.136e-1530.17Ras-related protein Rab-33B OS=Pongo abelii GN=RAB... [more]
RB33B_HUMAN7.136e-1530.17Ras-related protein Rab-33B OS=Homo sapiens GN=RAB... [more]
RB11B_DICDI7.136e-1531.48Ras-related protein Rab-11B OS=Dictyostelium disco... [more]
RASC_DICDI7.136e-1531.40Ras-like protein rasC OS=Dictyostelium discoideum ... [more]
RACC_DICDI7.136e-1529.52Rho-related protein racC OS=Dictyostelium discoide... [more]
RAB3D_MOUSE7.136e-1527.33Ras-related protein Rab-3D OS=Mus musculus GN=Rab3... [more]
RAB3D_HUMAN7.136e-1527.33Ras-related protein Rab-3D OS=Homo sapiens GN=RAB3... [more]
RAB26_BOVIN7.136e-1528.83Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RECG_ENTHI9.320e-1535.71Rho-related protein racG OS=Entamoeba histolytica ... [more]

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Properties
Property NameValue
Genbank descriptionC32014H06EF RVDevelop1 Citrus clementina cDNA clone C32014H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920926 ID=FC920926; Name=FC920926; organism=Citrus clementina; type=EST; length=689bp
ACATTCCCCGACACTCAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGC
AACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAA
GCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTT
GTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCAT
TGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATAC
GATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGA
GATGGATACTACATCCATGGGCAATTTGCTATCATCATGTTTGATGTTAC
TGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCA
GGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTG
AAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAA
TTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGC
CTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTT
GTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGC
TACACTACACATGAAGCTGAACTTGCTGCTGCTGCTAGT
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