FC920926

Overview
NameFC920926
Unique NameFC920926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920926_ssr674 microsatellite FC920926_ssr674:674..685. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:12..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15
Identity = 48/162 (29.63%), Postives = 86/162 (53.09%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            +KLV+VGDGG GK+    + +   F  +Y+PTI             G +     DTAGQE++  +R+ Y   G+  ++++++T+R ++  + T+++ + RV   +  P+VL  NK D++  +V  +A+     +  +  Y E SAK   N E+ F  L R +
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGAL-LDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTI 169          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB12_RAT (Ras-related protein Rab-12 (Fragment) OS=Rattus norvegicus GN=Rab12 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.320e-15
Identity = 46/153 (30.07%), Postives = 84/153 (54.90%), Query Frame = 1
Query:  118 VGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVK-NRQVKAKQVTFHRKK--NLQYYEISAKSNYNFEKPFLYL 564
            +G  G GKT+ ++R     F +  + T+GV+           KIR   WDTAGQE+F  +   YY   +  I+++D+T + T+ ++P W + + +   E+  ++L GNK+D + +R++  +Q     ++   ++  E SAK N+N ++ FL L
Sbjct:    1 IGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLAGNKLDCETDREISRQQGEKFAQQITGMRLSEPSAKDNFNVDEIFLKL 153          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RHO1_YEAST (GTP-binding protein RHO1 OS=Saccharomyces cerevisiae GN=RHO1 PE=1 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 54/166 (32.53%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNLQ-------YYEISAKSNYNFEKPF 555
            KLVIVGDG  GKT  +     G+F + Y PT+  E +  D   +  ++    WDTAGQE +  LR   Y      +I F +    + +NV   W  ++   C+ +PI+L G KVD++N        RQ   + VT    +++        YYE SAK+ Y   + F
Sbjct:   12 KLVIVGDGACGKTCLLIVFSKGQFPEVYVPTV-FENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVF 176          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RB33B_MOUSE (Ras-related protein Rab-33B OS=Mus musculus GN=Rab33b PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 54/179 (30.17%), Postives = 89/179 (49.72%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCR---VCENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKS---NYNFEKPFLYLARKLAGDPNLHFVESP 612
            FK++++GD   GKT    R   G F  + E TIGV+        +  +I+   WDTAGQE+F   +   YY +    + ++D+T   ++ ++P W  + C+   +  +IP +L GNK D+++  QV       F    ++  +E SAK+   N + E  F+ LA KL     L   + P
Sbjct:   34 FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEE-CKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLKSHKPLMLSQLP 211          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 51/162 (31.48%), Postives = 85/162 (52.47%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            +KLVIVG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   GQ  + ++ +T+R +Y  + ++   + RV   + +P++L GNK D+ + RQV   +     +  N  + E SAKS  N E+ F  L R++
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE-DSYRKQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREI 164          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAP1B_DANRE (Ras-related protein Rap-1b OS=Danio rerio GN=rap1b PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 49/163 (30.06%), Postives = 88/163 (53.99%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 576
            +KLV++G GG GK+    + + G F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  +  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RABQ_DICDI (Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 47/160 (29.38%), Postives = 85/160 (53.12%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQV-KAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKL 576
            K ++ G    GK++ + +    EF  + + TIGVE        +  KI+   WDTAGQE F  +   YY     A++ +D+T R +++ +  W  ++ ++   NI I L GNK D K+++V   ++   + K+N + ++E SAK   + E  F  +++K+
Sbjct:    7 KCIVTGPPFVGKSSLLLQFCEKEFSFEMDTTIGVEFQTRSILIDSSKIKLEIWDTAGQESFRSITTNYYRGAHIALLCYDITKRQSFQYLSGWMDEVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNAKENDILFFETSAKDYESVESVFDGVSKKV 166          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB38_MOUSE (Ras-related protein Rab-38 OS=Mus musculus GN=Rab38 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD-----VKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHFVESPALAPPEV 633
            +KL+++GD G GKT+ +KR++   F   Y  TIGV+    +  +     +R   WD AGQE+FG +   YY     A I+FDVT   T++ V  W  DL         + + +VL  NK D     + N  +K  Q  F ++   + ++E SAK N N ++    L +  LA + +L     P +  P +
Sbjct:   10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLTLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQ--FCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLLESIEPDIVKPHL 197          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB38_HUMAN (Ras-related protein Rab-38 OS=Homo sapiens GN=RAB38 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH-PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVD-----VKNRQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARK-LAGDPNLHFVESPALAPPEV 633
            +KL+++GD G GKT+ +KR++   F   Y  TIGV+    +  +     +R   WD AGQE+FG +   YY     A I+FDVT   T++ V  W  DL         + + +VL  NK D     + N  +K  Q  F ++   + ++E SAK N N ++    L +  LA + +L     P +  P +
Sbjct:   10 YKLLVIGDLGVGKTSIIKRYVHQNFSSHYRATIGVDFALKVLHWDPETVVRLQLWDIAGQERFGNMTRVYYREAMGAFIVFDVTRPATFEAVAKWKNDLDSKLSLPNGKPVSVVLLANKCDQGKDVLMNNGLKMDQ--FCKEHGFVGWFETSAKENINIDEASRCLVKHILANECDLMESIEPDVVKPHL 197          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: YPT7_YEAST (GTP-binding protein YPT7 OS=Saccharomyces cerevisiae GN=YPT7 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.590e-14
Identity = 48/166 (28.92%), Postives = 87/166 (52.41%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIR-FYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCENI------PIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLAR 570
            K++I+GD G GKT+ + R++  ++ ++Y+ TIG +    +   +  K+     WDTAGQE+F  L   +Y      ++++DVT   +++N+ +W RD   V  N+      P V+ GNK+D +  +     K+ Q       ++  +  SAK+  N +  F  +AR
Sbjct:   10 KVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW-RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIAR 174          
The following BLAST results are available for this feature:
BLAST of FC920926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS_SCHPO9.320e-1529.63Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RAB12_RAT9.320e-1530.07Ras-related protein Rab-12 (Fragment) OS=Rattus no... [more]
RHO1_YEAST1.217e-1432.53GTP-binding protein RHO1 OS=Saccharomyces cerevisi... [more]
RB33B_MOUSE1.217e-1430.17Ras-related protein Rab-33B OS=Mus musculus GN=Rab... [more]
RASD_DICDI1.217e-1431.48Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAP1B_DANRE1.217e-1430.06Ras-related protein Rap-1b OS=Danio rerio GN=rap1b... [more]
RABQ_DICDI1.217e-1429.38Ras-related protein RabQ OS=Dictyostelium discoide... [more]
RAB38_MOUSE1.217e-1431.05Ras-related protein Rab-38 OS=Mus musculus GN=Rab3... [more]
RAB38_HUMAN1.217e-1431.05Ras-related protein Rab-38 OS=Homo sapiens GN=RAB3... [more]
YPT7_YEAST1.590e-1428.92GTP-binding protein YPT7 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC32014H06EF RVDevelop1 Citrus clementina cDNA clone C32014H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920926 ID=FC920926; Name=FC920926; organism=Citrus clementina; type=EST; length=689bp
ACATTCCCCGACACTCAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGC
AACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAA
GCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTT
GTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCAT
TGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATAC
GATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGA
GATGGATACTACATCCATGGGCAATTTGCTATCATCATGTTTGATGTTAC
TGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCA
GGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTG
AAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAA
TTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGC
CTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTT
GTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGC
TACACTACACATGAAGCTGAACTTGCTGCTGCTGCTAGT
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