FC920926

Overview
NameFC920926
Unique NameFC920926
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length689
Libraries
Library NameType
RVDevelop1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC920926_ssr674 microsatellite FC920926_ssr674:674..685. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10203 contig Ccv1_Contig10203:12..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAP2B_HUMAN (Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2B PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 49/173 (28.32%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL--AGDPN 591
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD++      ++V++   K L       + E SAK+  + ++ F  + R++  A  PN
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGE----REVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPN 171          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAP2A_PIG (Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 49/173 (28.32%), Postives = 93/173 (53.76%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL--AGDPN 591
            +K+V++G GG GK+    + +TG F +KY+PTI  + +  +   +         DTAG E+F  +RD Y  +GQ  I+++ +  + +++++      + RV   E +P++L GNKVD++      ++V++   K L       + E SAK+  + ++ F  + R++  A  PN
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGSFIEKYDPTI-EDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYERVPMILVGNKVDLEGE----REVSYGEGKALAEEWSCPFMETSAKNKASVDELFAEIVRQMNYAAQPN 171          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RALBA_XENLA (Ras-related protein ralB-A OS=Xenopus laevis GN=ralb-A PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 47/162 (29.01%), Postives = 87/162 (53.70%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 576
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+++ RQV   +     ++  +QY E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLIVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB33_CAEEL (Ras-related protein Rab-33 OS=Caenorhabditis elegans GN=rab-33 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 1
Query:   64 MALPNQQTVDYP---SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE--------NIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAK---SNYNFEKPFLYLARKLAGDPNLH 597
            MAL    T  Y    +FK++IVG+   GKT    R   G F +  E TIGV+            +R   WDTAGQE++   +   YY +    + ++DVT R ++ ++  W ++    CE         +P +L GNK DV+  NR    +   F  + N+  +E SAK      + E  FL L  KL     +H
Sbjct:   85 MALAPSSTKTYKQKRTFKVIIVGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENELLRVQLWDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKE----CEKHGLVGDSEVPRILIGNKCDVECTNRVSTDEAQMFADRNNMALFETSAKLASEADHVESIFLTLLHKLQQSKPMH 275          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB32_PIG (Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 51/168 (30.36%), Postives = 87/168 (51.79%), Query Frame = 1
Query:  103 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQ-YYEISAKSNYNFEKPFLYLARKL 576
            FK++++G+ G GKT+ +KR++   F + Y  TIGV+  +  L++ +    +R   WD AGQE+FG +   YY     A+++FD++    ++ V  W  DL           IP VL  NK D K  + Q  ++   F ++     ++E SAK N N ++   +L   +
Sbjct:   28 FKVLVIGELGVGKTSIIKRYVHQLFSQHYRATIGVDFALKVLNWDSRT-LVRLQLWDIAGQERFGNMTRVYYKEAVGALVVFDISRGSPFEAVLKWKNDLDSKVHLPNGSPIPAVLLANKCDQKKDSGQNPSQMDQFCKEHGFTGWFETSAKDNINIDEAARFLVENI 194          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.041e-14
Identity = 45/157 (28.66%), Postives = 81/157 (51.59%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA 567
            K++++GD G GK+  + R     F   Y  TIGV+        +  KI+   WDTAGQE+F  +   YY      II++D+T+  ++ ++  W  D+ R    ++  ++ GNK D+ +++    ++   F  + N+   E SAK +   ++ F+ LA
Sbjct:   35 KILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLA 191          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  100 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 453
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  100 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 453
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 1
Query:  100 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 453
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of FC920926 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.890e-14
Identity = 58/171 (33.92%), Postives = 78/171 (45.61%), Query Frame = 1
Query:  106 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQFAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 570
            KLVIVGDG  GKT  +     G F + Y PT+  E +  D   +   I    WDTAGQE +  LR   Y      +I F V A  +  NV   W  ++   C N+PI+L G KVD++N         +   K +TF   + +       +Y E SAK N    + F   AR
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAAR 177          
The following BLAST results are available for this feature:
BLAST of FC920926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP2B_HUMAN6.041e-1428.32Ras-related protein Rap-2b OS=Homo sapiens GN=RAP2... [more]
RAP2A_PIG6.041e-1428.32Ras-related protein Rap-2a OS=Sus scrofa GN=RAP2A ... [more]
RALBA_XENLA6.041e-1429.01Ras-related protein ralB-A OS=Xenopus laevis GN=ra... [more]
RAB33_CAEEL6.041e-1430.77Ras-related protein Rab-33 OS=Caenorhabditis elega... [more]
RAB32_PIG6.041e-1430.36Ras-related protein Rab-32 OS=Sus scrofa GN=RAB32 ... [more]
RAB1C_DICDI6.041e-1428.66Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RHOG_MOUSE7.890e-1434.45Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN7.890e-1434.45Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR7.890e-1434.45Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
RHO5_SCHPO7.890e-1433.92GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]

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Properties
Property NameValue
Genbank descriptionC32014H06EF RVDevelop1 Citrus clementina cDNA clone C32014H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920926 ID=FC920926; Name=FC920926; organism=Citrus clementina; type=EST; length=689bp
ACATTCCCCGACACTCAGCGCTCTCTCGCTTAAATTCAAAATCCAAACGC
AACAAATCAACTCATGGCTCTGCCGAATCAGCAAACTGTTGATTATCCAA
GCTTCAAACTTGTAATTGTCGGCGATGGTGGCACTGGGAAGACTACCTTT
GTGAAGAGGCATCTTACTGGTGAATTCGAGAAGAAATATGAACCGACCAT
TGGTGTGGAAGTTCATCCATTGGACTTCTTTACCAACTGTGGAAAAATAC
GATTCTATTGCTGGGACACTGCCGGACAAGAGAAGTTTGGTGGTCTTAGA
GATGGATACTACATCCATGGGCAATTTGCTATCATCATGTTTGATGTTAC
TGCCCGCTTGACGTATAAGAATGTTCCGACGTGGCACCGTGATCTCTGCA
GGGTGTGTGAAAACATCCCAATTGTTCTTTGCGGGAACAAGGTCGATGTG
AAGAACAGGCAGGTGAAAGCAAAGCAGGTTACTTTCCACAGGAAGAAGAA
TTTGCAGTACTATGAGATCTCAGCCAAGAGCAATTACAACTTTGAGAAGC
CTTTTCTTTACCTTGCCAGAAAACTTGCTGGGGATCCTAACTTGCATTTT
GTCGAGTCTCCTGCCCTTGCTCCCCCAGAGGTGCAAATCGATTTGGCTGC
TACACTACACATGAAGCTGAACTTGCTGCTGCTGCTAGT
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