FC920943

Overview
NameFC920943
Unique NameFC920943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_SCHPO (Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces pombe GN=SPBC106.16 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.977e-32
Identity = 73/201 (36.32%), Postives = 119/201 (59.20%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGF-QLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTS 668
            YD   ++FSP+GRL QVEY  EA+    +AI +   + +V+  E+K   KL Q  ++ +K+  +D+HV  A AG+ +DA ILI+ ARV+AQ +     +P+ +E L + +   +Q YTQ GG+RPFGVS L AG+D      ++Y ++P+G Y  WK              L++++K+ +SR+E + LA+  L + + + S
Sbjct:    4 YDRALSVFSPDGRLLQVEYGQEAVRRGTTAIALRGNECIVIGVERKNVPKL-QNVSNFQKIAMVDNHVCLAFAGLNADARILIDKARVEAQNHKLNLADPVSIEYLTRYVAGVQQKYTQSGGVRPFGVSTLIAGFDVGDNTPRVYQTEPAGIYNAWKATAIGRASKAAREYLEKNWKEGLSRDETIHLAVSSLLEVVQTAS 203          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.977e-32
Identity = 77/206 (37.38%), Postives = 115/206 (55.83%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACA------VAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLXQTMDS 662
            YD   T+FSP+G L+QVEYA EA+    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A      V+G+ +DA I+IN ARV+ Q +     +P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y DD    +   ++L +K L + + S
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAVVASVSGLTADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQS 207          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.194e-32
Identity = 75/200 (37.50%), Postives = 113/200 (56.50%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLXQTMDS 662
            YD   T+FSP+G L+QVEYA EA+    +A+G+  KD VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ    RPFG+S L  G+D +   +LY +DPSG Y  WK               +++Y D+    +   ++L +K L + + S
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.784e-32
Identity = 75/202 (37.13%), Postives = 119/202 (58.91%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWD-KNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDY---KDDISREEAVQLALKVLXQTMDS 662
            YD   +IFSP+G ++QVEYA+EA+     A+G+  K+ VVL  E++ T KL  T  +  K+ KID HV  + +G+ +D+ ILI  ARV+AQ +    ++P+ VE L + +   +Q YTQ GG+RPFGVS L AG+D ++   +LY ++PSG Y  W               L+++Y   +   + EE V+L ++ L + + +
Sbjct:    4 YDRALSIFSPDGHIFQVEYALEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQT 205          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA2_SCHPO (Probable proteasome subunit alpha type-2 OS=Schizosaccharomyces pombe GN=SPCC1442.06 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.974e-31
Identity = 82/216 (37.96%), Postives = 117/216 (54.17%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQ-RYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            M+ +Y    T FSP G+L Q+EYA+ A+    +++GI + DGVVL  EKK TS+ L    S EK+  I   +    +G+  D  +L++ +R  AQ  Y   Y E  P + LVQ +    Q  TQ GG+RPFGVS L AG D+  G  LY  DPSG Y  WK            + L++ Y D++  ++AV  A+  L +T +   LT D +E+A V
Sbjct:    1 MTDKYAFSLTTFSPNGKLVQIEYALNAVNAGVTSVGIKATDGVVLATEKKPTSE-LAIGASLEKVCAITPDIGMVYSGMGPDFRVLVDKSRKVAQTTYKKIYNEYPPTKILVQEIASVMQESTQSGGVRPFGVSLLVAGMDEK-GPSLYQVDPSGTYFAWKATAIGKSSTAAKTFLEKRYNDELELDDAVHTAILALKETFEG-ELTEDNIEIAVV 213          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.578e-31
Identity = 71/192 (36.98%), Postives = 112/192 (58.33%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKV 641
            RYD   TIFSP+G L+QVEYA EA+    +A+G+  KD +V+  EKK +   LQ   +  K++ IDDHV  A AG+ +DA +L++ AR++ Q Y    ++P+ V  + + + +TKQ +TQ  G RPFG+S L  G+D +   +L+ ++PSG Y  +               L++ Y ++ + +EA  L L V
Sbjct:    3 RYDRAITIFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDCIVIGVEKK-SIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVV 193          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA2_CAEEL (Proteasome subunit alpha type-2 OS=Caenorhabditis elegans GN=pas-2 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.397e-31
Identity = 78/214 (36.45%), Postives = 110/214 (51.40%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQ-LYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            M   Y    T FSP G+L Q+EYA+ A+ N   ++G+ +KDGVVL  E  V S L       E++ K   H+ C  +G+  D  IL+  AR  A  Y   Y E MP  QLV  +    Q YTQ GG+RPFG S L AGWDKN G   L+  DPSG Y  WK            + L++ + + +  ++ +  AL  L ++ D   +  + +E+A
Sbjct:    1 MGDHYGFSLTTFSPSGKLMQIEYALNAVKNGQPSVGLRAKDGVVLATEN-VGSVLTDDQPKVEQISK---HIGCVYSGMGPDFRILVKKARKIAMEYEMMYGEEMPTIQLVTDIAAVMQEYTQSGGVRPFGASLLIAGWDKNPGRPLLFQCDPSGAYFAWKATALGKNDVNAKTFLEKRFSEALELDDGIHTALLTLRESFD-VGMNENNVEVA 209          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA5_RAT (Proteasome subunit alpha type-5 OS=Rattus norvegicus GN=Psma5 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.500e-31
Identity = 84/219 (38.36%), Postives = 124/219 (56.62%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG--------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD     FSPEGRL+QVEYA+E      +AIGI + +GV L  EK++TS L++ S S EK+ +ID H+ CA++G+++DA  LI+ ARV+ Q + + Y E M VE + Q++ +      QFG          RPFGV+ LF G D+  G QL+  DPSG +                S L++ Y    + +EA++ +L +L Q M+   L +  +ELA V
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEGHKLGSTAIGIQTSEGVCLAVEKRITSPLMEPS-SIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLA---LQFGEEDADPGAMSRPFGVALLFGGVDEK-GPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQEVYHKSTTLKEAIKSSLIILKQVMEE-KLNATNIELATV 220          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.500e-31
Identity = 73/205 (35.61%), Postives = 120/205 (58.54%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYK--DDISREEAVQLALKVLXQTMDSTSLT 674
            +YDS  T FSP GR++Q+EYAMEA+   G+A+ + SK   VLV  K+ +S+L    +  +K++ +DDHV  A++G+ +DA +L N  R +   Y Y Y+  M VE+LV  + D  Q +TQ  G RP+GV  L AG+D+  G  +Y + PSGN+  +K            + L++ ++  ++ + E+ +   L+ L +T+ +T  T
Sbjct:    5 QYDSDITTFSPSGRIHQIEYAMEAVKQGGAAVALKSKQFAVLVSLKRSSSEL---GSYQKKIFVVDDHVGIAISGLTADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYDQ-LGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDT 205          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA5_CAEEL (Proteasome subunit alpha type-5 OS=Caenorhabditis elegans GN=pas-5 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 78/218 (35.78%), Postives = 124/218 (56.88%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD     FSPEGRL+QVEYA+EA+    ++IGI + +GV+L  EK+ TSKL+  + + EK+ K+D H+    AG+++D+  L+  A+++AQ + + Y   + VE + QS+ +      QFG         RPFGV+ LFAG D+  G +L+  DPSG +   K              LK+ Y D ++ +E +++AL +L Q M+   L S  +E+  +
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAVKLGSTSIGIKTSEGVLLAAEKRSTSKLM-VNDAIEKISKVDQHIGVTFAGLIADSRTLVERAQIEAQNFWFTYNRKIRVEDVTQSVANLA---LQFGDDDVKASMSRPFGVAMLFAGVDQE-GAKLFHLDPSGTFIDCKAKSIGAASDGAEQNLKEQYHDALTIKEGLKMALAILKQVMEE-KLNSANVEVVVI 219          
The following BLAST results are available for this feature:
BLAST of FC920943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA7_SCHPO3.977e-3236.32Probable proteasome subunit alpha type-7 OS=Schizo... [more]
PSA7_RAT3.977e-3237.38Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSA7_CHICK5.194e-3237.50Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA7_YEAST6.784e-3237.13Proteasome component PRE6 OS=Saccharomyces cerevis... [more]
PSA2_SCHPO1.974e-3137.96Probable proteasome subunit alpha type-2 OS=Schizo... [more]
PSA7_CAEEL2.578e-3136.98Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA2_CAEEL4.397e-3136.45Proteasome subunit alpha type-2 OS=Caenorhabditis ... [more]
PSA5_RAT7.500e-3138.36Proteasome subunit alpha type-5 OS=Rattus norvegic... [more]
PSA1_DICDI7.500e-3135.61Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA5_CAEEL1.279e-3035.78Proteasome subunit alpha type-5 OS=Caenorhabditis ... [more]

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Properties
Property NameValue
Genbank descriptionC32201B05EF RVDevelopN Citrus clementina cDNA clone C32201B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920943 ID=FC920943; Name=FC920943; organism=Citrus clementina; type=EST; length=715bp
GGTCGAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAA
CCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGA
AGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTG
GTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAA
AAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGAT
GTACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTG
ATGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACA
TATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTG
TGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTG
TTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTAC
ATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGG
TGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATG
ATATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCNAGCAA
ACCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGT
TTTCTGATGCCTTCT
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