FC920943

Overview
NameFC920943
Unique NameFC920943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_YEAST (Proteasome component C1 OS=Saccharomyces cerevisiae GN=PRE10 PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.279e-30
Identity = 74/212 (34.91%), Postives = 117/212 (55.19%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQ---DYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            YD   ++FSP+GR +QVEYA++A+ N  ++IGI   DGVV   EK +TSKLL    +  K+  +D H+ C  +G++ D   L+N  R +A  +   Y+ P+P+      L    Q +T +  +RPFGVS +F G DKN G  LYM +PSG+Y G+K            + L++    + + +S  EAV+ A K++    +       +LE++
Sbjct:    8 YDLSNSVFSPDGRNFQVEYAVKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQKNV-KIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKN-GAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEIS 217          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA5_ENTHI (Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 84/215 (39.07%), Postives = 123/215 (57.21%), Query Frame = 3
Query:   72 DSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            D     FS EGRL+QVEYA EA+    + IGI +K+GVVL  EK+++S L+  S S EK+ +IDDH+  AV+G+ +DA  LI+ AR++AQ + + Y EP+ VE + Q++ D    + +         RPFGV+ L AG D+  G +L+ +DPSG +  +             SIL + Y   ++  EA  LAL  L Q M+   L S  +E+A V
Sbjct:    9 DHGVNTFSSEGRLFQVEYATEAMKLGSTVIGIQTKEGVVLAVEKRISSPLMLGS-SIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPINVEVVAQAISDLSLRFGEGSRKKKVMSRPFGVALLIAGVDET-GPRLFQTDPSGMFIEFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEE-KLNSKNVEVALV 220          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA5_DROME (Proteasome subunit alpha type-5 OS=Drosophila melanogaster GN=Prosalpha5 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 80/215 (37.21%), Postives = 118/215 (54.88%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-------LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLEL 692
            YD     FSPEGRL+QVEYA+EAI    +AIGI + +GVVL  EK++TS L+  ST  EK+ ++D H+ CA +G+M+DA  LI  ARV+ Q + + Y E M +E   Q++      +   G         RPFGV+ LFAG +     QL+  DPSG +                  L+  ++ D++ +EA+ ++L  L Q M+   L S  +E+
Sbjct:    8 YDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAVEKRITSPLMVPST-VEKIVEVDKHIGCATSGLMADARTLIERARVECQNHWFVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEAGQP-QLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDISLNTLKQVMEE-KLNSTNVEV 219          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA71_DROME (Proteasome subunit alpha type-7-1 OS=Drosophila melanogaster GN=Pros28.1 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 73/204 (35.78%), Postives = 114/204 (55.88%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLXQTMDS 662
            MS RYD   TIFSP+G L QVEYA EA+    +A+G+   + VVL  EKK  ++L Q      K+  +D+HV  A AG+ +DA I+IN A+V+ Q +    ++P+ +E + + +   KQ YTQ  G RPFG+S L  G+D +    L+ ++PSG +  +K               ++ Y+++    E  AV+LA++ L +   S
Sbjct:    1 MSSRYDRAVTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKKSVAQL-QEDRKVRKICMLDNHVVMAFAGLTADARIMINRAQVECQSHRLNVEDPVTLEYITRFIAQLKQKYTQSNGRRPFGISCLIGGFDADGSAHLFQTEPSGIFYEYKANATGRSAKVVREFFEKSYREEEVANEHGAVKLAIRALLEVAQS 203          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_MOUSE (Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.722e-30
Identity = 78/212 (36.79%), Postives = 117/212 (55.19%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   + FSP+GR++QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWV 217          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 71/200 (35.50%), Postives = 109/200 (54.50%), Query Frame = 3
Query:   60 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTM 656
            S  +D   TIFSPEGRLYQVEYA +AI     + + + S D  V+  +KKVT K +   T T  +++I   + CA+ G ++D+   +  AR +A  + Y Y   MPV+ L + + D  Q YTQ   +RP G S +   +D   G  +Y +DP+G + G+K            S L++ YK ++S E+A+QLA+  L   +
Sbjct:    6 SAGFDRHITIFSPEGRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTH-LFRITKDIGCAMTGRIADSRSQVQKARYEAANFRYKYGYEMPVDVLCRRIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKKYKPNLSEEKAIQLAISCLSSVL 204          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_RAT (Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 78/212 (36.79%), Postives = 117/212 (55.19%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   + FSP+GR++QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWV 217          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_BOVIN (Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 78/212 (36.79%), Postives = 117/212 (55.19%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   + FSP+GR++QVEYAM+A+ N+ +AIGI  KDGVV   EK V SKL +   S ++++ +D HV  AVAG+++DA  L + AR +A  +   +   +P++ L   +      YT +  +RPFG SF+   +  N G QLYM DPSG +YG W              I K   K+   R+   ++A K++    D     + +LEL+ V
Sbjct:    8 YDLSASTFSPDGRVFQVEYAMKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYEEG-SNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDVVKEVA-KIIYIVHDEVKDKAFELELSWV 217          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA2_NEUCR (Probable proteasome subunit alpha type-2 OS=Neurospora crassa GN=B14D6.510 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.862e-30
Identity = 79/216 (36.57%), Postives = 116/216 (53.70%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTAR-VQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            M+ RY    T FSP G+L Q+EYA+ A+    +A+GI + +G+VL  EKK +S L   S S  K+  I  ++    +G+  D  +L++ AR V    Y   Y E  P   LVQ +    Q  TQ GG+RP+GVS L AGWD+  G  LY  DPSG+Y  WK            + L++ Y + +  E+AV +AL  L +T++   +  D +E+  V
Sbjct:    1 MADRYSFSLTTFSPSGKLVQIEYALNAVNQGVTALGIKATNGIVLATEKKSSSPLADPS-SLSKISLITPNIGMVYSGMGPDYRVLVDRARKVSHTGYKRIYNEYPPTRILVQDVARVMQEATQSGGVRPYGVSLLIAGWDEG-GPMLYQVDPSGSYFPWKATAIGKNATTAKTFLEKRYTEGLELEDAVHIALLTLKETIEG-EMNGDTIEIGIV 213          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.349e-30
Identity = 75/199 (37.69%), Postives = 111/199 (55.78%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVLXQTM 656
            YD   TIFSPEGRLYQVEYA +A+ +AG ++IG+  KD V +V +KKV  KLL   TS   ++ I  ++     G+ +DA  L+  AR +A  + + +   MPV+ L + + D  Q YTQ   +RP GV  +  G+D+    QL+  DP+G++ G K            + L++  KDD   S EE VQ+A+  L   +
Sbjct:    9 YDRHITIFSPEGRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLD-HTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKWIADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVL 206          
The following BLAST results are available for this feature:
BLAST of FC920943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA3_YEAST1.279e-3034.91Proteasome component C1 OS=Saccharomyces cerevisia... [more]
PSA5_ENTHI1.671e-3039.07Proteasome subunit alpha type-5 OS=Entamoeba histo... [more]
PSA5_DROME1.671e-3037.21Proteasome subunit alpha type-5 OS=Drosophila mela... [more]
PSA71_DROME2.182e-3035.78Proteasome subunit alpha type-7-1 OS=Drosophila me... [more]
PSA3_MOUSE3.722e-3036.79Proteasome subunit alpha type-3 OS=Mus musculus GN... [more]
PSA6_DROME4.862e-3035.50Proteasome subunit alpha type-6 OS=Drosophila mela... [more]
PSA3_RAT4.862e-3036.79Proteasome subunit alpha type-3 OS=Rattus norvegic... [more]
PSA3_BOVIN4.862e-3036.79Proteasome subunit alpha type-3 OS=Bos taurus GN=P... [more]
PSA2_NEUCR4.862e-3036.57Probable proteasome subunit alpha type-2 OS=Neuros... [more]
PSA6_ORYSJ6.349e-3037.69Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]

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Properties
Property NameValue
Genbank descriptionC32201B05EF RVDevelopN Citrus clementina cDNA clone C32201B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920943 ID=FC920943; Name=FC920943; organism=Citrus clementina; type=EST; length=715bp
GGTCGAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAA
CCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGA
AGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTG
GTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAA
AAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGAT
GTACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTG
ATGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACA
TATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTG
TGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTG
TTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTAC
ATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGG
TGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATG
ATATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCNAGCAA
ACCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGT
TTTCTGATGCCTTCT
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