FC920943

Overview
NameFC920943
Unique NameFC920943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA71_DROVI (Proteasome subunit alpha type-7-1 OS=Drosophila virilis GN=Pros28.1 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.564e-28
Identity = 76/204 (37.25%), Postives = 116/204 (56.86%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYK-DDISREE-AVQLALKVLXQTMDS 662
            MS RYD   TIFSP+GRL QVEYA EA+    +A+G+   + VVL  EKK  +KL +  T   +   + DHV  A AG+ +DA ILIN A+V+ Q +    ++P+ +E + + +   KQ YTQ  G RPFG+S L  G+D +    L+ ++PSG +  +K               ++ Y+ +++S E  AV+LA++ L +   S
Sbjct:    1 MSSRYDRAVTIFSPDGRLLQVEYAQEAVRKGSTAVGVRGGNCVVLGVEKKSVAKLQEDRTV--RKICVLDHVVMAFAGL-TDARILINRAQVECQSHRLNVEDPVTLEYITRYIAQLKQKYTQSNGRRPFGISCLIGGFDADGSPYLFQTEPSGIFYEYKANATGCSAKTVREFFEKQYREEEVSTERGAVKLAIRALLEVAQS 201          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 74/199 (37.19%), Postives = 109/199 (54.77%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVLXQTM 656
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL  S+ T  ++ I  ++     GI +DA  L+  AR QA  + + Y   MPV+ L + + D  Q YTQ   +RP GV  +  G D+  G  LY  DP+G++ G K            + L++  K++   + +E VQ A+  L   +
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTH-LFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKWIADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVL 206          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_TRYCR (Proteasome subunit alpha type-1 OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.043e-28
Identity = 71/195 (36.41%), Postives = 109/195 (55.90%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD--DISREEAVQLALKVL 644
            +YD+ TT +SP GRL+QVEYA EA+ N  +A+G  +KD VVL   K+  S + Q S+  EK++K+DDHV  A+AG+++D  +L    R +   Y Y +    P+  + + + +  Q + QF G RPFGV  L AG+D   G  LY + PSG+   +K            + L++ ++   D   +E +  ALK L
Sbjct:    5 QYDTNTTTWSPTGRLFQVEYANEAVNNGSAAVGAKNKDFVVLTALKR--SPVAQFSSYQEKVFKLDDHVGMAIAGLVADGRMLARFVRTECMNYRYMHDSDNPLPLIAEIVGEKYQRHIQFAGKRPFGVGLLIAGYDST-GPHLYHTVPSGDVFDFKATAMGLRSQAARTYLEKHFESFPDCGLDELIMHALKAL 196          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA72_DROME (Proteasome subunit alpha type-7-1A OS=Drosophila melanogaster GN=Pros28.1A PE=2 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.668e-28
Identity = 74/215 (34.42%), Postives = 119/215 (55.35%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            MS RY    TIFSP+G L QVEYA EA+    +A+G+   + VVL  EK   S++ Q   +  K+  +D HVA A AG+ +DA ILIN  +V+ Q +   ++  + +E + + L   KQ YTQ  G RPFG+S L  G D +   +L+ ++PSG +  +K               ++ Y D    ++ +A++LA++ L   ++ T ++  +LE+A
Sbjct:    1 MSSRYGRALTIFSPDGHLLQVEYAQEAVRKGSTAVGVRGANCVVLGVEKSSVSEM-QEDRTVRKISMLDRHVALAFAGLTADARILINRGQVECQSHRLNFENQVTLEYITRYLAQLKQKYTQCNGRRPFGISCLIGGIDADGSARLFHTEPSGIFHEYKATATGRWANTVREFFEKAYSDHEVTTKCDAIKLAMRAL---LEVTQMSQMRLEVA 211          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA2_YEAST (Proteasome component Y7 OS=Saccharomyces cerevisiae GN=PRE8 PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.484e-28
Identity = 73/214 (34.11%), Postives = 116/214 (54.21%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQR-YTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            M+ RY    T FSP G+L Q++YA+ A+    +++GI + +GVV+  EKK +S L  + T + K+  +   +    +G+  D  +L++ +R  A   Y   Y E  P + LV  +    Q  TQ GG+RPFGVS L AG D+  GF LY  DPSG+Y  WK            + L++ + D++  E+A+ +AL  L ++++      D +ELA
Sbjct:    1 MTDRYSFSLTTFSPSGKLGQIDYALTAVKQGVTSLGIKATNGVVIATEKKSSSPLAMSETLS-KVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEG-EFNGDTIELA 212          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA73_DROME (Proteasome subunit alpha type-7-1B OS=Drosophila melanogaster GN=Pros28.1B PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.014e-27
Identity = 69/214 (32.24%), Postives = 120/214 (56.07%), Query Frame = 3
Query:   57 MSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDS-TSLTSDKLELA 695
            M++RYD   TI+SP+G L QVEYA EA+    + +G+ + + +V+  EK+    L Q      K+  +DDHV    +G+ +DA IL++ A+++AQ +   +++P  VE + + +   KQ YTQ  G RPFG+S L  G+D++    L+ +DPSG +  W+              +++ + D+I        A+K + +T+ S +SL   ++E+A
Sbjct:    1 MAQRYDRAVTIYSPDGHLLQVEYAQEAVRRGSTVMGLRTNNAIVIGVEKRSVGDL-QEERMVRKICMLDDHVVMTFSGLTADARILVSRAQMEAQSHRLNFEKPTTVEYITRYIAQLKQNYTQSNGRRPFGLSCLVGGFDEDGTPHLFQTDPSGIFYEWRANTTGRSSQPVRDYMEK-HADEILTIADEAAAIKHIVRTLVSVSSLNHTQMEVA 212          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.258e-27
Identity = 70/214 (32.71%), Postives = 114/214 (53.27%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYK--DDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            +YD+  T +SP GRL+QVEYAMEA+    + +G+ S+   VL    K  S+L   S+   K++++ DH   A+AG+ +D  +L    R +   + + Y  P+PV +L   L D  Q  TQ    RP+GV  L AG D++ G  LY + PSGNY  ++            + L++ ++  +D + E+ ++ AL  + +T+    LTS    +A V
Sbjct:    5 QYDTDVTTWSPAGRLFQVEYAMEAVKQGSACVGLRSRTHAVLAAANKAASEL---SSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIV 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_ACACA (Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba castellanii PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.852e-27
Identity = 71/211 (33.65%), Postives = 121/211 (57.35%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD  +T FSP+GR++QVEYA +A+ N+G+A+G+  KDGVVL  EK + SK+L  +T+  +++ +D H   A++G+++D   L++  R +A  Y   Y   +  + L + L +  Q Y+ +G +RPFG S +    DKN G QLYM +PSG   G+             + +++    +++  EA++ A K++    D     + +LEL+ V
Sbjct:    6 YDLSSTTFSPDGRVFQVEYAAKAVDNSGTALGLRVKDGVVLAVEKLLVSKMLVPNTN-RRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDISGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKN-GPQLYMIEPSGISWGYFGVAIGKGARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDDAKDKAFELELSWV 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_DROME (Proteasome subunit alpha type-3 OS=Drosophila melanogaster GN=Prosalpha7 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.581e-27
Identity = 66/200 (33.00%), Postives = 109/200 (54.50%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGW---KXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMD 659
            YD   + FSP+GR++Q++YA +A+  +G+ IGI  KD VVL  EK +TSKL +      +++ I+ ++  AVAG+++D N + + AR +A  Y   +++ +P++ L   +      YT +  +RPFG+S + A WD+  G QLY  +PSG+  G+                  LK D + D   E A ++  KV  +  D
Sbjct:    8 YDLSASQFSPDGRVFQIDYASKAVEKSGTVIGIRGKDAVVLAVEKIITSKLYEPDAGG-RIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAIPLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASGKAKQLAKTEMEKLKMDMRTDELVESAGEIIYKVHDELKD 206          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.259e-26
Identity = 69/199 (34.67%), Postives = 107/199 (53.77%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD--ISREEAVQLALKVLXQTM 656
            YD   TIFSPEGRL+QVEYA +A+  AG ++IG+  KD V +V +KKV  KLL  S S   ++ +  ++     G+ +D+  L+  AR +A  + + Y   MP + L + + D  Q YTQ   +RP GV  +  G D+  G  LY  DP+G++ G K            + L++  K++   + +E VQ A+  L   +
Sbjct:    9 YDRHITIFSPEGRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQS-SVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKWIADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPAFTYDETVQTAISALQSVL 206          
The following BLAST results are available for this feature:
BLAST of FC920943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA71_DROVI1.564e-2837.25Proteasome subunit alpha type-7-1 OS=Drosophila vi... [more]
PSA6A_ARATH2.043e-2837.19Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA1_TRYCR2.043e-2836.41Proteasome subunit alpha type-1 OS=Trypanosoma cru... [more]
PSA72_DROME2.668e-2834.42Proteasome subunit alpha type-7-1A OS=Drosophila m... [more]
PSA2_YEAST3.484e-2834.11Proteasome component Y7 OS=Saccharomyces cerevisia... [more]
PSA73_DROME1.014e-2732.24Proteasome subunit alpha type-7-1B OS=Drosophila m... [more]
PSA1_ORYSJ2.258e-2732.71Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSA3_ACACA3.852e-2733.65Proteasome subunit alpha type-3 (Fragment) OS=Acan... [more]
PSA3_DROME8.581e-2733.00Proteasome subunit alpha type-3 OS=Drosophila mela... [more]
PSA6B_ARATH4.259e-2634.67Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC32201B05EF RVDevelopN Citrus clementina cDNA clone C32201B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920943 ID=FC920943; Name=FC920943; organism=Citrus clementina; type=EST; length=715bp
GGTCGAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAA
CCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGA
AGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTG
GTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAA
AAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGAT
GTACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTG
ATGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACA
TATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTG
TGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTG
TTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTAC
ATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGG
TGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATG
ATATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCNAGCAA
ACCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGT
TTTCTGATGCCTTCT
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