FC920943

Overview
NameFC920943
Unique NameFC920943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 9.488e-26
Identity = 73/217 (33.64%), Postives = 110/217 (50.69%), Query Frame = 3
Query:   60 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDY--KDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            S  +D   TIFSPEGR+YQVEYA +AI +   +A+ +   D  V+  +K+V   L+   T T  +Y+I   V C   G++ DA   I  A+ +A  + Y     MP E L + + D  Q YTQ   +R  G + LF  +D   G ++Y  DP+G Y G K            S L++    K +++  EA++LA++ L QT     + S  LE+  V
Sbjct:    6 SAGFDRHITIFSPEGRVYQVEYAFKAINSTNLTAVAVKGADAAVIAVQKRVPDSLIVADTVT-SVYQISQSVGCCAIGMIPDAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEAL-QTSLGIDVRSKDLEVVVV 220          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_CAEEL (Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7 PE=1 SV=3)

HSP 1 Score: 117.087 bits (292), Expect = 9.488e-26
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG---NYGGW 533
            YD   + FSP+GR++QVEYA +A+ NAG+ I I  K+GVV+V +K ++SK L T  +  +M+ ++D+V  AVAG   D   L N A  +A ++   Y+EPMP++ +  S+ +    +T  G  RPFG    F  W+K  G +L++ +PSG    Y  W
Sbjct:    8 YDLAASTFSPDGRIFQVEYAQKAVDNAGTMIAIRGKNGVVVVADKLISSK-LYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQNIANSVAEYIHIHT-LGISRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAW 163          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA73_DROVI (Proteasome subunit alpha type-7-1B OS=Drosophila virilis GN=Pros28.1B PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.618e-25
Identity = 73/210 (34.76%), Postives = 110/210 (52.38%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            R+D    I+S +G L QVEYA EA+   GS +G+ +K+ VVL  EK+    L Q   ++ K+ KID H+A   AG+ +DA +L++ A+V+AQ +   +  P  VE + + L   KQ YTQ    RPFGVS L  G+D++   +L+ +DPSG Y  W               L+++        +A      V+     +TSL    +ELA
Sbjct:    3 RFDESVNIYS-DGHLLQVEYAQEAV-RKGSTVGLRTKECVVLGVEKRAIDSL-QIERTSRKIKKIDQHMAMTFAGLTADARVLVSRAQVEAQSHRLNFDRPASVEYITRYLARLKQTYTQSVARRPFGVSCLIGGFDEDGRPRLFQTDPSGIYYEWSANTTGRLGQTVNEYLEKNTAAISRTPDAASAMKHVVRALFTATSLDPASIELA 209          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 68/218 (31.19%), Postives = 115/218 (52.75%), Query Frame = 3
Query:   60 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDD---ISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            +R +D   T+FSPEGRLYQVEYA +A  NAG +++G+  K+   ++ +KKV  KL+  ST  + ++ I   + C + G ++DA   ++ AR +A  + Y    PMP + L + + +  Q  TQ   +RP GV+      D   G  L+  DP+G Y G+K            + L++ +K D    +  + V+  ++ L  ++ ST   S +L++  V
Sbjct:    4 ARGFDRTITVFSPEGRLYQVEYAFKAFNNAGITSVGVTGKNCACVISQKKVPDKLIDAST-VKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALMSSL-STDFKSTELQIGVV 219          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_ORYSJ (Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica GN=PAG1 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.709e-25
Identity = 72/210 (34.29%), Postives = 114/210 (54.29%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            YD   T FSP+GR++QVEYA +A+ N+G+ +GI  KDG+VL  EK VTSK++    S  +++ +  H   AVAG+ +D   +++ A+ +A  Y   Y EP+ V++L   +       T +  LRPFG   +  G+D++ G QLYM +PSG +Y  +              I K    +   RE  V++A K++    D     + +LEL+
Sbjct:    8 YDLSVTTFSPDGRVFQVEYATKAVDNSGTVVGIKCKDGIVLGVEKLVTSKMM-LEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPISVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGVSYKYFGAALGKGRQAAKTEIEKLKLSELTCREGIVEVA-KIIYGVHDEAKDKAFELELS 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA3_SPIOL (Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.049e-24
Identity = 68/210 (32.38%), Postives = 114/210 (54.29%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSG-NYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            YD   T FSP+GR++Q+EYA +A+ N+G+A+GI  KDG+VL  EK + SK++    S  +++ +  H   AVAG+ +D   ++  A+ +A  Y   Y E +PV++L   +       T +  LRPFG   +  G+D++ G QLYM +PSG +Y  +              I K    +   RE  +++A K++ +  D     + +LE++
Sbjct:    8 YDLSVTTFSPDGRVFQIEYAAKAVDNSGTAVGIKCKDGIVLGVEKLIQSKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAVPVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMVEPSGISYRYFGAAIGKGKQAAKTEIEKLKLSEMTCREGIIEVA-KIIYKVHDEAKDKAFELEMS 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBR (Proteasome subunit alpha type-1 OS=Trypanosoma brucei rhodesiense PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.789e-24
Identity = 60/157 (38.22%), Postives = 91/157 (57.96%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK 536
            +YD+ TT +SP GRL+QVEYA EA+ N  +A+G+   D VVL   K+  + +   S+  EK +K+D+HV  A++G+++D   L    R +   Y Y +    P+  L   +    Q + QF G RPFGV  L AG+D+  G +LY + PSG+   +K
Sbjct:    5 QYDTDTTTWSPTGRLFQVEYANEAVNNGSAAVGVKGADYVVLTALKR--NPVSGLSSYQEKAFKLDEHVGMAISGLVADGRALSRFLRTECMNYRYMHDSDAPLVMLADIVGAKHQRHIQFAGKRPFGVGLLIAGYDRQ-GPRLYQTVPSGDVFDFK 158          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA4_ENCCU (Probable proteasome subunit alpha type-4 OS=Encephalitozoon cuniculi GN=PRE9 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 70/207 (33.82%), Postives = 109/207 (52.66%), Query Frame = 3
Query:   78 RTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAG-WDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDY-KDDISREEAVQLALKVLXQTMDSTSLTSDKLEL 692
            ++  F+ EGRL QVE+A++ +  AG+ IG +  DGVVL+G  K       T+   EK+Y++ D + C + G+  DA  L   AR++AQ     +    P+  L + +   KQ +TQ+ G RPFGVSFL+AG  D  Y   L  +DPSG    WK              LK D+ +D++  + A    L++L +  +     +D+LE+
Sbjct:    7 KSNTFTDEGRLPQVEFAIKNVSRAGTIIGYVCSDGVVLMGVNKEP-----TNGPMEKIYQLSDSIYCVLCGLFGDAMELKRYARIKAQEVLERFGVECPLTTLCKFVGQRKQAFTQYAGTRPFGVSFLYAGVIDGKYA--LMSTDPSGTSNRWKGMCYGENEEAINRGLKNDFPEDEMDMKTATVEILRLLGKARELGPKEADRLEI 206          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_SCHPO (Probable proteasome subunit alpha type-1 OS=Schizosaccharomyces pombe GN=SPAC6G10.04c PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.337e-24
Identity = 71/215 (33.02%), Postives = 115/215 (53.49%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQ--DYKDDISREEAVQLALKVLXQTMD-STSLTSDKLELAEV 701
            +YD   T +SP+GRL+QVEYA+EAI    + +G++SK   VLV  K+   +L   S+  +K+ +IDDH+  A+AG+  DA +L N  + +A      +  P+PV +L+  + +  Q  TQ  G RP+GV FL  G+D++ G  L    PSG    +             + +++  D   D SREE +  AL+ L  T+     LT + + ++ +
Sbjct:    5 QYDGDATTWSPQGRLHQVEYALEAIKQGSATVGLVSKTHAVLVALKRNAEEL---SSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEKAQINTQEYGRRPYGVGFLVIGYDES-GPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIERNLDTFPDSSREELILSALRALRDTLSKDQELTEENVSISVI 215          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_DROME (Proteasome subunit alpha type-1 OS=Drosophila melanogaster GN=Pros35 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 67/207 (32.37%), Postives = 110/207 (53.14%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD--DISREEAVQLALKVLXQTMDSTSLTSD 680
            +YDS  T++SP+GRL+QVEYAMEA+    + +G+ +KD  VLV   K TS+L  T     K+  IDDH+  ++AG+ +DA +L    R +   Y ++Y    PV +L+ +L +  Q  TQ    RP+GV  L AG+D+  G  +Y   PS  +   K            + L+++     D S++E ++  ++ +  T+ +     D
Sbjct:    5 QYDSDVTVWSPQGRLHQVEYAMEAVKLGTATVGLKNKDYAVLVALCKPTSELSDTQ---RKIIPIDDHLGISIAGLTADARVLSRYLRSECLNYKHSYDTTYPVSRLITNLGNKMQTTTQRYDRRPYGVGLLVAGYDER-GPHIYQVTPSATFFNCKANSIGSRSQSARTYLEKNLNKFLDSSKDEIIRHGIRAILGTLPTDEQGKD 207          
The following BLAST results are available for this feature:
BLAST of FC920943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA6_CAEEL9.488e-2633.64Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSA3_CAEEL9.488e-2639.24Proteasome subunit alpha type-3 OS=Caenorhabditis ... [more]
PSA73_DROVI1.618e-2534.76Proteasome subunit alpha type-7-1B OS=Drosophila v... [more]
PSA6_SCHPO2.114e-2531.19Probable proteasome subunit alpha type-6 OS=Schizo... [more]
PSA3_ORYSJ4.709e-2534.29Proteasome subunit alpha type-3 OS=Oryza sativa su... [more]
PSA3_SPIOL1.049e-2432.38Proteasome subunit alpha type-3 OS=Spinacia olerac... [more]
PSA1_TRYBR1.789e-2438.22Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSA4_ENCCU2.337e-2433.82Probable proteasome subunit alpha type-4 OS=Enceph... [more]
PSA1_SCHPO2.337e-2433.02Probable proteasome subunit alpha type-1 OS=Schizo... [more]
PSA1_DROME3.052e-2432.37Proteasome subunit alpha type-1 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionC32201B05EF RVDevelopN Citrus clementina cDNA clone C32201B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920943 ID=FC920943; Name=FC920943; organism=Citrus clementina; type=EST; length=715bp
GGTCGAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAA
CCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGA
AGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTG
GTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAA
AAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGAT
GTACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTG
ATGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACA
TATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTG
TGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTG
TTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTAC
ATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGG
TGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATG
ATATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCNAGCAA
ACCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGT
TTTCTGATGCCTTCT
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