FC920943

Overview
NameFC920943
Unique NameFC920943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14398 contig Ccv1_Contig14398:81..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 2.584e-23
Identity = 61/199 (30.65%), Postives = 109/199 (54.77%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD--DISREEAVQLALKVLXQTM 656
            +YD+  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY   +            + L++   +    + +E V+  L+ L +T+
Sbjct:    5 QYDNDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETL 199          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 9.818e-23
Identity = 62/196 (31.63%), Postives = 106/196 (54.08%), Query Frame = 3
Query:   75 SRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKD--DISREEAVQLALKVLXQTM 656
            S  T++SP+GR++Q+EYAMEA+    + +G+ SK   VLV  K+  S+L   +   +K+  +D+H+  ++AG+ +DA +L N  R +     + +  P+PV +LV  +    Q  TQ  G RP+GV  L AG+D + G  ++ + PS NY   K            + L++   +  D +  E V+  L+ L +T+
Sbjct:    7 SDVTVWSPQGRIHQIEYAMEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILYVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETL 198          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.312e-22
Identity = 67/216 (31.02%), Postives = 106/216 (49.07%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYK-------DDISREEAVQLALKVLXQTMDSTSLTSDKLEL 692
            YD   TIFSPEGRLYQVEYA +A      +++ +  KD  V++ +KKV  KLL  +T    ++ I   +   V G + DA      A+ +A  + Y Y   MP + L + + +  Q YTQ   +RP GV   F   D+  G  +Y +DP+G Y G+K            + L+  +K       ++ S E+ V+ A+  +   +  T  + + LE+
Sbjct:   12 YDRHITIFSPEGRLYQVEYAFKATNQTNINSLAVRGKDCTVVISQKKVPDKLLDPTT-VSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDAL-GTEFSKNDLEV 225          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA5_ENCCU (Probable proteasome subunit alpha type-5 OS=Encephalitozoon cuniculi GN=PUP2 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.158e-21
Identity = 66/209 (31.58%), Postives = 111/209 (53.11%), Query Frame = 3
Query:   90 FSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQ-----SLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            +S EGR++Q+EYAM+A+    + IG+ +K+ V+L  EKK+ S  LQ   S  K YKI DH+    +GI  D   ++  +R     +T+ Y E + VE+L++     SL   ++   +    RPFGVS + AG+D     +LY  DPSG+Y  +K             IL+ +Y++    +++++  L  L + M    ++ D +E+  V
Sbjct:   11 YSSEGRIHQIEYAMKAMNLGTTTIGVRTKEFVILCSEKKILS-TLQNPKSVVKHYKIYDHIVLGFSGISGDTKTIVKRSRDFCISHTHMYGENISVERLLKYLSSLSLRFGEEDEAKMIFRRPFGVSLIIAGFDTEP--RLYSLDPSGSYISYKAKAIGSGHEVVEGILENEYEEYSGLDQSLRKVLCTLSKVM-KDKISKDNVEVVVV 215          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 59/161 (36.65%), Postives = 83/161 (51.55%), Query Frame = 3
Query:   57 MSRR-YDSRTTIFSPEGRLYQVEYAMEAIGNAG-SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKN-----YGFQLYMSDPSG 518
            MSR  +D   T+FSPEG LYQVEYA +A+  AG   + I  KD V++  +  V  KL++  T T  +Y ++D+    + G   D   L+  AR +A  Y Y Y  PM V  L +   D  Q  TQ  G+R  G    F G ++N     +  Q+Y  DP+G
Sbjct:    1 MSRAGFDKYITVFSPEGSLYQVEYAFKAVTYAGLLTVAIRCKDAVLVFTQHSVPDKLMRPETIT-SLYNVNDNTGVCITGRAPDGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAG 160          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMB_METTH (Proteasome subunit beta OS=Methanobacterium thermoautotrophicum GN=psmB PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 51/186 (27.42%), Postives = 92/186 (49.46%), Query Frame = 3
Query:  153 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVE---QLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            + +GI  KDGVV   E++ +   L    +T+K++KID+H+A  +AG ++DA  L+   + +A  Y     E + +E    L  ++  + + Y       PF V  L  G D+N G ++Y  DPSG     K             +L+  Y D++  +EAV +A++ +   M+  + + + + +A V
Sbjct:   11 TTVGITCKDGVVFATERRASMGNLIAHKATDKIFKIDEHIAATIAGSVADAQSLMKYLKAEAALYRMRNSEKISIEAAAALAANILHSSRFY-------PFIVQTLLGGVDEN-GAKIYSLDPSGGMIPDKFVSTGSGSPVAYGVLEDRYSDELYVDEAVDVAIRAIKSAMERDTYSGNGILVATV 188          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMB_PYRHO (Proteasome subunit beta OS=Pyrococcus horikoshii GN=psmB PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.571e-12
Identity = 50/176 (28.41%), Postives = 85/176 (48.30%), Query Frame = 3
Query:  153 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSD 680
            + +GI+ KDGVVL  +++ +   +  + +  K++KID+H+A A AG + D   L+   R +A+ Y     + M V+ L   L +   G   F    P+   FL  G+D+    +LY  D  G     K            SIL  +YKD+++ EE ++LA+K +   +     + D
Sbjct:   12 TTVGIVCKDGVVLAADRRASLGNIIYARNVTKIHKIDEHLAIAGAGDVGDILNLVRLLRAEAKLYYSQSGKRMSVKALATLLANIMNGAKYF----PYLAWFLVGGYDEKP--KLYSVDMVGGITEDKYATAGSGMEFAYSILDSEYKDNLTLEEGIKLAVKAINTAIKRDVFSGD 181          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMB_METJA (Proteasome subunit beta OS=Methanocaldococcus jannaschii GN=psmB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 45/184 (24.46%), Postives = 80/184 (43.48%), Query Frame = 3
Query:  153 SAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-XXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            + +G++  D V+L  +K+ +   L      +K+YKIDD++A  +AG + DA  ++     +A+ Y       +P       L +       F    PF    +  G+D   G +L+  DP G     K              +L+  Y  D+S EE ++LAL  L   M+  + + + + LA +
Sbjct:    8 TTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSRMF----PFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERDTFSGNGISLAVI 187          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMB_ARCFU (Proteasome subunit beta OS=Archaeoglobus fulgidus GN=psmB PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 48/191 (25.13%), Postives = 83/191 (43.46%), Query Frame = 3
Query:  132 EAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWK-XXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            E I    + +G++ KDGVV+  EK+ T      S + +K+Y+I D +A   AG + DA  L    +++A  Y    +    V  +     +    Y  F    P+ V  L  G D   G  +Y  DP G     K              +L+  +  +I  +EAV+LA++ +   M   S + D +++ ++
Sbjct:    6 EKIYKGTTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYRYF----PYLVQLLIGGIDSE-GKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGIDVVKI 191          
The following BLAST results are available for this feature:
BLAST of FC920943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA1_RAT2.584e-2330.65Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA1_CHICK9.818e-2331.63Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSA6_YEAST8.312e-2231.02Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA5_ENCCU3.158e-2131.58Probable proteasome subunit alpha type-5 OS=Enceph... [more]
PSA1_TRYBB1.123e-1836.65Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSMB_METTH1.285e-1427.42Proteasome subunit beta OS=Methanobacterium thermo... [more]
PSMB_PYRHO1.571e-1228.41Proteasome subunit beta OS=Pyrococcus horikoshii G... [more]
PSMB_METJA1.737e-1124.46Proteasome subunit beta OS=Methanocaldococcus jann... [more]
PSMB_ARCFU2.963e-1125.13Proteasome subunit beta OS=Archaeoglobus fulgidus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32201B05EF RVDevelopN Citrus clementina cDNA clone C32201B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920943 ID=FC920943; Name=FC920943; organism=Citrus clementina; type=EST; length=715bp
GGTCGAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAA
CCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGA
AGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTG
GTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAA
AAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGAT
GTACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTG
ATGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACA
TATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTG
TGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTG
TTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTAC
ATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGG
TGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATG
ATATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCNAGCAA
ACCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGT
TTTCTGATGCCTTCT
back to top