FC920943

Overview
NameFC920943
Unique NameFC920943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14398 contig Ccv1_Contig14398:81..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_PYRKO (Proteasome subunit alpha OS=Pyrococcus kodakaraensis GN=psmA PE=3 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.705e-46
Identity = 92/211 (43.60%), Postives = 143/211 (67.77%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TSKL++ S S EK++ IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+DDI +++A++LA+  L +T++    T++ +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKDGVVLAVEKRITSKLIEPS-SYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYRDDIGKDDAIKLAILALAKTLEEP--TAEGIEVAYI 215          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.078e-45
Identity = 92/209 (44.02%), Postives = 140/209 (66.99%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELA 695
            YD   T+FSP+GRL+QV YA EA+    +A+G+   +GVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ +   Y EP P+  +V+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I ++ YKDD+S EEA++LA+  L +TM+  S  ++ +E+A
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCNEGVVLAVEKRITSRLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAG--VNEKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDDMSLEEAIKLAIFALAKTMEKPS--AENIEVA 213          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.839e-45
Identity = 91/211 (43.13%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QV YA EA+    +A+G+  KDGVVL  EK++TS+L++   S EK+++IDDH+A A +GI++DA +L+N AR++AQ +   Y EP P+  +V+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I +  Y+DD++ +EA++LA+  L +TM+  S  ++ +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKCKDGVVLAVEKRITSRLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAG--VNDKPELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDDMTLDEAIKLAIFALAKTMEKPS--AENIEVAVI 215          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.402e-45
Identity = 92/211 (43.60%), Postives = 141/211 (66.82%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QV+YA EA+    +A+G+  KDGVVL  EK+VTSKL++   S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +L+ +DPSG Y  WK            +I ++ Y+D+++ EEA++LA+  L + M+  S  S ++ +  V
Sbjct:   10 YDRAITVFSPDGRLFQVQYAREAVKRGATAVGVKCKDGVVLAVEKRVTSKLIEPE-SYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAG--VNEKPELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPSPESIEVAVISV 217          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_THEGJ (Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.350e-45
Identity = 92/211 (43.60%), Postives = 139/211 (65.88%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QV YA EA+    +A+G+  K GVVL  EK++TS+L++ S S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  WK            +I ++ Y DDI  E A++LA+  L +T++  S   + +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKGGVVLAVEKRITSRLIEPS-SYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNEKPELYETDPSGAYFEWKAVAIGSGRNTAMAIFEEHYSDDIDMEGAIKLAILALAKTLEEPS--PESIEVAYI 215          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.988e-45
Identity = 92/192 (47.92%), Postives = 131/192 (68.23%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVL 644
            YD   T+FSPEGRLYQVEYA EA+    +AIGI  KDGVVL  ++++TSKL++   S EK+++IDDHVA A +G+++DA +LI+ AR++AQ Y   Y E + +E L + +CD KQ YTQ GG+RPFGVS L AG DKN   +L+ +DPSG    +K             +L+++Y+DDI+ +E ++LA+  L
Sbjct:    9 YDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIR-SIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEA-RLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITAL 198          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.126e-45
Identity = 91/211 (43.13%), Postives = 139/211 (65.88%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QV YA EA+    +A+G+  K+GVVL  EK++TSKL++ S S EK+++IDDH+A A +GI++DA +L++ AR++AQ Y   Y EP+P+  LV+ +CD KQ +TQ+GG+RPFG + L AG   N   +LY +DPSG Y  W+            +I +  Y DD+  E A++LA+  L +T++  S   + +E+A +
Sbjct:   10 YDRAITVFSPDGRLFQVNYAREAVKRGATAVGVKWKEGVVLAVEKRITSKLIEPS-SYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAG--VNDKPELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDDLDMEGAIKLAILALAKTLEEPS--PESIEVAYI 215          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.655e-44
Identity = 91/211 (43.13%), Postives = 139/211 (65.88%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QVEYA EA+    +A+GI  ++GVVL  +K+VTSKL++   S EK+Y+ID H+  A AG+++DA +L+  AR++AQ Y Y Y EP+ V+ LV+++CD KQ YTQ GG+RPFG + L AG D   G +L+ +DPSG     K             + +++Y++D++ +EA++LA++ L +       T+D LE+A V
Sbjct:   10 YDRAITVFSPDGRLFQVEYAREAVKRGTTALGIKVEEGVVLGVDKRVTSKLIEPE-SIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTK-GCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYREDMTLQEAIELAVRALYEA-SREETTADNLEIAVV 217          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.008e-43
Identity = 90/211 (42.65%), Postives = 138/211 (65.40%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD   T+FSP+GRL+QVEYA EA+    +AIGI  K+GV+L+ +K+V SKLL+  T  EK+YKID+H+  A +G+++DA +LI+ AR++AQ     Y EP+ V++L + +CD KQ YTQ+GG+RPFGVS L AG D+    +LY +DPSG    +K               +++Y+DD+S ++A+ L L  +  +++S  L  + +E+  V
Sbjct:    8 YDRAITVFSPDGRLFQVEYAREAVKRGATAIGIKCKEGVILIADKRVGSKLLEADT-IEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEVP--KLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYV 214          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 92/217 (42.40%), Postives = 132/217 (60.83%), Query Frame = 3
Query:   51 PKMSRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            P     YD   TIFSPEG++YQVEYA EA+      +G+  K GVVL  EK+  S L  +S S EK+Y ID+HVA + +G+++DA ILI+ AR  A  + + Y EP+ VE L +++C+ KQ YTQFGG RPFGV+ L AG D+ +G +LY +DPSG Y G+               L+++YK D+   E ++LALK L   ++ T   + ++  A +
Sbjct:    3 PPAMAGYDRAITIFSPEGKIYQVEYAGEAVKRGWPTVGVKCKAGVVLTAEKRKISALFDSS-SLEKIYLIDEHVAASPSGLLADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDR-HGARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFDMEMGECIELALKALASAVEITDSANVEVAYATI 217          
The following BLAST results are available for this feature:
BLAST of FC920943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSMA_PYRKO3.705e-4643.60Proteasome subunit alpha OS=Pyrococcus kodakaraens... [more]
PSMA_PYRHO1.078e-4544.02Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_PYRAB1.839e-4543.13Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSMA_THESM2.402e-4543.60Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_THEGJ5.350e-4543.60Proteasome subunit alpha OS=Thermococcus gammatole... [more]
PSMA_METJA6.988e-4547.92Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSMA_THEON9.126e-4543.13Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSMA_METKA2.655e-4443.13Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_ARCFU5.008e-4342.65Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_PYRAE2.748e-4142.40Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]

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Properties
Property NameValue
Genbank descriptionC32201B05EF RVDevelopN Citrus clementina cDNA clone C32201B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920943 ID=FC920943; Name=FC920943; organism=Citrus clementina; type=EST; length=715bp
GGTCGAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAA
CCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGA
AGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTG
GTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAA
AAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGAT
GTACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTG
ATGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACA
TATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTG
TGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTG
TTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTAC
ATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGG
TGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATG
ATATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCNAGCAA
ACCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGT
TTTCTGATGCCTTCT
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