FC920943

Overview
NameFC920943
Unique NameFC920943
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14398 contig Ccv1_Contig14398:81..795. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_MOUSE (Proteasome subunit alpha type-7 OS=Mus musculus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 78/200 (39.00%), Postives = 115/200 (57.50%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLXQTMDS 662
            YD   T+FSP+G L+QVEYA EA+    +A+G+  KD VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y DD    +   ++L +K L + + S
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQS 201          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA5_TRYBB (Proteasome subunit alpha type-5 OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 82/216 (37.96%), Postives = 126/216 (58.33%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGG-----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD     FSPEGR++Q+EYA+EAI    +++GI + D V++  EK+V S L+  S S  K+ +ID H+   ++G+++DA IL++ ARV+AQ + + Y EPM VE    + CD    + + GG      RPFGVS L AG D+N G QL+ +DPSG Y  +             ++  + Y  +++ EEA  L +++L Q M+   LT   +E+A V
Sbjct:    8 YDRGVNTFSPEGRIFQIEYAIEAIKLGSTSLGIQTPDAVIIAAEKRVPSTLVDPS-SVNKILEIDHHIGTVLSGMVADARILVDHARVEAQNHRFTYDEPMSVESCALATCDLSVQFGESGGRKKLMSRPFGVSLLIAGVDEN-GPQLWQTDPSGTYTRYDAQAIGGGAEAAQTVFSERYHRNMTVEEAENLTVQILRQVMEE-KLTKTSVEIAIV 220          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.118e-34
Identity = 78/211 (36.97%), Postives = 118/211 (55.92%), Query Frame = 3
Query:   60 SRRYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLEL 692
            + RY    T FSP G+L Q+EYA+ A+     ++GI++ +GVV+  E K  S L +   S  ++  I +H+    +G+  D  +L+  AR  AQ Y   Y+EP+PV QLVQ +    Q YTQ GG+RPFGVS L  GWD +  + LY SDPSG Y  WK            + L++ Y +D+  ++AV  A+  L +  +   +T+D +E+
Sbjct:    3 TERYSFSLTTFSPSGKLVQLEYALAAVSGGAPSVGIIASNGVVIATENKHKSPLYEQH-SVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDNDRPY-LYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSEDLELDDAVHTAILTLKEGFEG-KMTADNIEI 210          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_BOVIN (Proteasome subunit alpha type-7 OS=Bos taurus GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.253e-34
Identity = 77/200 (38.50%), Postives = 115/200 (57.50%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLXQTMDS 662
            YD   T+FSP+G L+QVEYA EA+    +A+G+  KD VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+    +   ++L +K L + + S
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGKDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA1_HALMA (Proteasome subunit alpha 1 OS=Haloarcula marismortui GN=psmA1 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.549e-34
Identity = 84/197 (42.64%), Postives = 114/197 (57.87%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMD 659
            YD   TIFSP+GRLYQVEYA EA+    ++IG+ + DGVVL  +K++ S L++ S S EK++K DDH+  A AG ++DA  LI+ AR QAQ     Y EP+ VE L + + D  Q YTQ GG RPFGV+ +  G   N   +L+ +DPSG    WK              L++ Y + +  +E V LAL  L    D
Sbjct:   10 YDRGITIFSPDGRLYQVEYAREAVKRGTASIGVRTSDGVVLAVDKRIRSPLMERS-SVEKIHKADDHIGIASAGHVADARQLIDFARRQAQVNQLRYGEPVGVETLTKEITDYIQQYTQVGGARPFGVALIIGG-IVNGEPRLFETDPSGTPYEWKALAVGADRGDIRDYLEEHYDEGMDLDEGVDLALAALASVND 204          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.248e-34
Identity = 76/200 (38.00%), Postives = 115/200 (57.50%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLXQTMDS 662
            YD   T+FSP+G L+QVEYA EA+    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++P+ VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+    +   ++L +K L + + S
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAVKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSMA2_HALVO (Proteasome subunit alpha 2 OS=Halobacterium volcanii GN=psmA2 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.754e-33
Identity = 80/211 (37.91%), Postives = 119/211 (56.40%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD  T++FSP+GR+YQVEYA EA+      +G+ + DGVVL   +   S+L++   S EK++K+DD +  A AG ++DA  L++ AR  AQR    Y EP+ VE L +++ D  Q  TQ GG RP+G S L  G +   G +L+ +DPSG    WK            + L+  Y +D+S E+ + LA++ L        + SD+L L  V
Sbjct:    9 YDRGTSLFSPDGRIYQVEYAREAVKRGAPVLGVRTADGVVLAALRSTPSELMEAE-SIEKLHKLDDALGAATAGHVADARKLVDFARTTAQREHLRYGEPIGVETLTKTITDNIQESTQSGGTRPYGASLLIGGVENGSG-RLFATDPSGTPQEWKAVAIGGHREDVQAALEDGYAEDLSLEDGLALAVEALVAA--DEEIESDELNLVTV 215          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA7_PONAB (Proteasome subunit alpha type-7 OS=Pongo abelii GN=PSMA7 PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 76/200 (38.00%), Postives = 114/200 (57.00%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREE--AVQLALKVLXQTMDS 662
            YD   T+FSP+G L+QVEYA EAI    +A+G+  +D VVL  EKK  +KL Q   +  K+  +DD+V  A AG+ +DA I+IN ARV+ Q +    ++ + VE + + +   KQ YTQ  G RPFG+S L  G+D +   +LY +DPSG Y  WK              L+++Y D+    +   ++L +K L + + S
Sbjct:    3 YDRAITVFSPDGHLFQVEYAQEAIKKGSTAVGVRGRDIVVLGVEKKSVAKL-QDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDSVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS 201          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA5_DICDI (Proteasome subunit alpha type-5 OS=Dictyostelium discoideum GN=psmA5 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 87/217 (40.09%), Postives = 129/217 (59.45%), Query Frame = 3
Query:   69 YDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCD--TKQGYTQFGG----LRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            YD     FSPEGRL+QVEYA+EAI      IG+  ++GVVL  EK++TS LL+ S S +K+ +ID H+ CA++G+++DA  +I+ AR++ Q + + Y EPM VE  VQS+CD   + G  +  G     RPFGV+ L AG D+  G  LY SDPSG +  +             + L++ Y   ++  E  +LAL  L Q M+  ++T+  +ELA +
Sbjct:    8 YDRGVNTFSPEGRLFQVEYALEAIK---LGIGVQCEEGVVLAVEKRLTSPLLEPS-SIQKVVEIDYHLICALSGLVADARTIIDHARIETQNHRFNYNEPMGVESCVQSICDLALRFGENRNSGEERMSRPFGVALLIAGIDEK-GPSLYYSDPSGTFTQFHAKAIGAGSEGAQTTLQEKYSKTLTIAECQKLALTTLKQVMEE-AITTTNVELAVI 218          
BLAST of FC920943 vs. ExPASy Swiss-Prot
Match: PSA2B_ARATH (Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.698e-33
Identity = 73/212 (34.43%), Postives = 125/212 (58.96%), Query Frame = 3
Query:   66 RYDSRTTIFSPEGRLYQVEYAMEAIGNAGSAIGILSKDGVVLVGEKKVTSKLLQTSTSTEKMYKIDDHVACAVAGIMSDANILINTARVQAQRYTYAYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKXXXXXXXXXXXXSILKQDYKDDISREEAVQLALKVLXQTMDSTSLTSDKLELAEV 701
            +Y    T FSP G+L Q+E+A+ A+G+  +++GI + +GVV+  EKK+ S +L    S +K+  +  ++    +G+  D  +L+  +R QA++Y   Y+EP+PV QLV+      Q +TQ GG+RPFGVS L AG+D + G QLY  DPSG+Y  WK            + L++ Y +D+  ++A+  A+  L +  +   ++S  +E+ ++
Sbjct:    5 QYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKASNGVVIATEKKLPS-ILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPIPVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYD-DKGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGFEG-EISSKNIEIGKI 213          
The following BLAST results are available for this feature:
BLAST of FC920943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 179
Match NameE-valueIdentityDescription
PSA7_MOUSE1.118e-3439.00Proteasome subunit alpha type-7 OS=Mus musculus GN... [more]
PSA5_TRYBB1.118e-3437.96Proteasome subunit alpha type-5 OS=Trypanosoma bru... [more]
PSA2_DROME1.118e-3436.97Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSA7_BOVIN3.253e-3438.50Proteasome subunit alpha type-7 OS=Bos taurus GN=P... [more]
PSMA1_HALMA5.549e-3442.64Proteasome subunit alpha 1 OS=Haloarcula marismort... [more]
PSA7_HUMAN7.248e-3438.00Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]
PSMA2_HALVO2.754e-3337.91Proteasome subunit alpha 2 OS=Halobacterium volcan... [more]
PSA7_PONAB4.698e-3338.00Proteasome subunit alpha type-7 OS=Pongo abelii GN... [more]
PSA5_DICDI4.698e-3340.09Proteasome subunit alpha type-5 OS=Dictyostelium d... [more]
PSA2B_ARATH4.698e-3334.43Proteasome subunit alpha type-2-B OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC32201B05EF RVDevelopN Citrus clementina cDNA clone C32201B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920943 ID=FC920943; Name=FC920943; organism=Citrus clementina; type=EST; length=715bp
GGTCGAAGAGCATTACCTTTGAGTAGGCTGACAAAGAATTACATTCATAA
CCAAAAATGTCTCGGAGATATGATAGCCGTACCACAATTTTCTCCCCTGA
AGGCCGTCTCTATCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCTG
GTAGTGCAATTGGAATATTATCGAAAGATGGGGTTGTCTTGGTTGGTGAA
AAGAAGGTTACTTCGAAGCTCCTGCAAACCTCAACTTCCACTGAGAAGAT
GTACAAGATTGATGATCATGTTGCTTGTGCCGTAGCTGGAATAATGTCTG
ATGCCAACATCCTAATCAACACTGCCAGGGTCCAAGCCCAACGTTACACA
TATGCCTACCAAGAGCCAATGCCTGTTGAGCAGCTTGTTCAATCTCTTTG
TGATACAAAGCAAGGTTACACCCAGTTTGGCGGTCTCCGCCCCTTTGGTG
TTTCATTTCTTTTTGCAGGGTGGGACAAAAATTATGGCTTCCAACTTTAC
ATGAGTGATCCTAGTGGAAACTATGGTGGTTGGAAAGCTGCTGCTATTGG
TGCAAATAACCAGGCTGCACAATCAATCCTCAAACAAGATTACAAGGATG
ATATTTCAAGGGAAGAAGCAGTTCAACTAGCACTGAAGGTGCTCNAGCAA
ACCATGGACAGCACCAGTCTTACTTCTGATAAGCTTGAATTAGCTGAGGT
TTTCTGATGCCTTCT
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