FC920952

Overview
NameFC920952
Unique NameFC920952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig814 contig Ccv1_Contig814:62..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.210e-23
Identity = 48/93 (51.61%), Postives = 64/93 (68.82%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            +P   GE  + C ++S+LP ++  +GGK + L+P+ Y LKV       C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD  N RVGFAEAA
Sbjct:  318 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.181e-23
Identity = 46/92 (50.00%), Postives = 64/92 (69.57%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +P   GE  +DC ++ +LP +SF +GGK + LT +QY+LK   G    C+SG   L++ PP GPLWILGDVF+G Y+TVFD  + RVGFA++
Sbjct:  304 IPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGFAKS 395          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.729e-22
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 3
Query:  201 VNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +N+     P   GE  VDCS +  LP +SF +GGK FDL    Y+L+V       C+SGF  +D+ PP GPLWILGDVF+G Y+T FD  N RVGFA A
Sbjct:  288 INKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFATA 386          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_BOVIN (Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.564e-22
Identity = 48/93 (51.61%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            +P   GE  + C ++SSLP V+  +GGK + L+P+ Y LKV   +   C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVG AEAA
Sbjct:  296 VPLIQGEYMIPCEKVSSLPEVTVKLGGKDYALSPEDYALKVSQAETTVCLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDQNRVGLAEAA 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_CANFA (Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.721e-21
Identity = 45/92 (48.91%), Postives = 62/92 (67.39%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +P   GE  + C ++S+LP V+  +GGK++ L+ + Y LKV  G    C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVG A+A
Sbjct:  316 VPLIQGEYMIPCEKVSTLPDVTLKLGGKLYKLSSEDYTLKVSQGGKTICLSGFMGMDIPPPGGPLWILGDVFIGCYYTVFDRDQNRVGLAQA 407          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATEA_XENLA (Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.146e-20
Identity = 48/85 (56.47%), Postives = 59/85 (69.41%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 491
            G+  VDCS L+ +P V+FTI G  + +TP QY L+ GGG    C SGF  LD+ PP GPLWILGDVF+G Y++VFD  N RVG A
Sbjct:  304 GDYEVDCSVLNEMPTVTFTINGIGYQMTPQQYTLQDGGG---VCSSGFQGLDIPPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 47/93 (50.54%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            +P   GE  + C ++ SLP V+ T+GGK + L+ + Y LKV       C+SGF  +D+ PP GPLWILGDVF+G Y+TVFD    RVG AEAA
Sbjct:  253 VPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDLNRVGLAEAA 345          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.497e-20
Identity = 45/91 (49.45%), Postives = 64/91 (70.33%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQ-CISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 491
            +P   GE  V+CS++ SLP ++F +GG+ FDL    YIL++  G+    C+SGF  +D+  P GPLWILGDVF+G +++VFD+ N RVGFA
Sbjct:  302 IPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGFA 392          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATEB_XENLA (Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 44/85 (51.76%), Postives = 58/85 (68.24%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 491
            G+  VDC+ L+ +P ++FTI G  + +TP QY L+    D   C SGF  LD++PP GPLWILGDVF+G Y++VFD  N RVG A
Sbjct:  304 GDYEVDCTVLNKMPTMTFTINGIGYQMTPQQYTLQ---DDDGVCSSGFQGLDISPPAGPLWILGDVFIGQYYSVFDRGNNRVGLA 385          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CARDH_CYNCA (Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.216e-19
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 3
Query:  306 IFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            +F LTP+QYILK   G+A QCISGF+A+D A   GPLWILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct:  205 VFGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 265          
The following BLAST results are available for this feature:
BLAST of FC920952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CATD_HUMAN4.210e-2351.61Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_CLUHA7.181e-2350.00Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
ASPP_AEDAE2.729e-2250.51Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_BOVIN3.564e-2251.61Cathepsin D OS=Bos taurus GN=CTSD PE=1 SV=2[more]
CATD_CANFA6.721e-2148.91Cathepsin D OS=Canis familiaris GN=CTSD PE=2 SV=1[more]
CATEA_XENLA1.146e-2056.47Cathepsin E-A OS=Xenopus laevis GN=ctse-A PE=1 SV=... [more]
CATD_PIG1.497e-2050.54Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]
ASP3_CAEEL1.497e-2049.45Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]
CATEB_XENLA8.216e-1951.76Cathepsin E-B OS=Xenopus laevis GN=ctse-B PE=2 SV=... [more]
CARDH_CYNCA8.216e-1972.31Cardosin-H (Fragments) OS=Cynara cardunculus PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionC32201C05EF RVDevelopN Citrus clementina cDNA clone C32201C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920952 ID=FC920952; Name=FC920952; organism=Citrus clementina; type=EST; length=694bp
TCATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGTCTCGAGATGTG
AGTATGGGCGTTGAGAGTGTCGTTCCTGAGAATAATCATAGAGCATCTGG
TGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGCAGTTGTGTGGA
TGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCATTCTTAACTAT
GTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGAGAATCGGCTGT
TGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTTTACGATTGGTG
GAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCAAAGTGGGCGGG
GGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTAGATGTTGCCCC
ACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTATGGGTCCCTACC
ACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTGCTGAAGCCGCG
TAAATAAGTTTGTTTTAAATATGCTCAGTGAACCGTACCTCGTGGAATTT
CAGTTGTTTCTTTAAGATGTTGAAACTAAACCTTAAATAACTGTTCTATG
TAAATGCTCTGATGTATGACAGCTGTTGAGAAGCCCAAAGACGTGGACTT
TGTTTATAATCCGTGCCTGGACTCTGAAAAAAAAAAAAAAAAAA
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