FC920952

Overview
NameFC920952
Unique NameFC920952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig814 contig Ccv1_Contig814:62..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CARDG_CYNCA (Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  309 FDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            F LTP+QYILK   G+A QCISGF+A+D A   GPLWILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct:  207 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 266          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CARDF_CYNCA (Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  309 FDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            F LTP+QYILK   G+A QCISGF+A+D A   GPLWILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct:  222 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 281          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CARDE_CYNCA (Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.830e-18
Identity = 47/64 (73.44%), Postives = 52/64 (81.25%), Query Frame = 3
Query:  309 FDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            F LTP+QYILK   G+A QCISGF+A+D A   GPLWILGDVFM PYHTVFDY N+ VGFAEAA
Sbjct:  165 FGLTPEQYILK---GEATQCISGFTAMD-ATLLGPLWILGDVFMRPYHTVFDYGNLLVGFAEAA 224          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: NAPSA_MOUSE (Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.122e-18
Identity = 43/95 (45.26%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  201 VNELCDRLPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVG 485
            +N+     P   G+  + CS+  +LP VSF +GG  F+LT   Y++K+   D   C+ GF ALD+  P GPLWILGDVF+GPY  VFD  +  VG
Sbjct:  294 LNKAIGGYPFLNGQYFIQCSKTPTLPPVSFHLGGVWFNLTGQDYVIKILQSDVGLCLLGFQALDIPKPAGPLWILGDVFLGPYVAVFDRGDKNVG 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: NAPSA_HUMAN (Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.326e-18
Identity = 46/96 (47.92%), Postives = 57/96 (59.38%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNM----RVGFAEA 497
            +P   GE  + CS +  LP VSF +GG  F+LT   Y+++        C+SGF ALDV PP GP WILGDVF+G Y  VFD  +M    RVG A A
Sbjct:  306 IPLLAGEYIILCSEIPKLPAVSFLLGGVWFNLTAHDYVIQTTRNGVRLCLSGFQALDVPPPAGPFWILGDVFLGTYVAVFDRGDMKSSARVGLARA 401          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATE_RAT (Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 45/91 (49.45%), Postives = 58/91 (63.74%), Query Frame = 3
Query:  228 SPM-GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +PM GE AVDC+ L+ +P V+F I G  + L+P  YIL         C SGF  LD+ PP GPLWILGDVF+  +++VFD  N +VG A A
Sbjct:  306 TPMDGEYAVDCATLNMMPNVTFLINGVSYTLSPTAYILPDLVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRKFYSVFDRGNNQVGLAPA 396          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATE_HUMAN (Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.713e-16
Identity = 43/87 (49.43%), Postives = 55/87 (63.22%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            GE AV+C+ L+ +P V+FTI G  + L+P  Y L         C SGF  LD+ PP GPLWILGDVF+  +++VFD  N RVG A A
Sbjct:  313 GEYAVECANLNVMPDVTFTINGVPYTLSPTAYTLLDFVDGMQFCSSGFQGLDIHPPAGPLWILGDVFIRQFYSVFDRGNNRVGLAPA 399          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_PIG (Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  + CS + SLP + FTI G  + L+P  YIL+    D   C SGF  +DV    G LWILGDVF+  Y+TVFD +N +VG A  A
Sbjct:  302 GEMVISCSSIDSLPDIVFTINGVQYPLSPSAYILQ----DDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPVA 385          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA2_MACFU (Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 44/88 (50.00%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  V CS +SSLP + FTI G  + + P  YIL+  G     CISGF  +DV    G LWILGDVF+  Y TVFD +N +VG A  A
Sbjct:  305 GEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQSQGS----CISGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATE_MOUSE (Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            GE AVDC+ L ++P V+F I    + L P  YIL         C SGF  LD+ PP GPLWILGDVF+  +++VFD  N +VG A A
Sbjct:  309 GEYAVDCATLDTMPNVTFLINEVSYTLNPTDYILPDLVDGMQFCGSGFQGLDIPPPAGPLWILGDVFIRQFYSVFDRGNNQVGLAPA 395          
The following BLAST results are available for this feature:
BLAST of FC920952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CARDG_CYNCA1.830e-1873.44Cardosin-G (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDF_CYNCA1.830e-1873.44Cardosin-F (Fragments) OS=Cynara cardunculus PE=1 ... [more]
CARDE_CYNCA1.830e-1873.44Cardosin-E (Fragments) OS=Cynara cardunculus PE=1 ... [more]
NAPSA_MOUSE3.122e-1845.26Napsin-A OS=Mus musculus GN=Napsa PE=1 SV=1[more]
NAPSA_HUMAN5.326e-1847.92Napsin-A OS=Homo sapiens GN=NAPSA PE=1 SV=1[more]
CATE_RAT1.713e-1649.45Cathepsin E OS=Rattus norvegicus GN=Ctse PE=1 SV=3[more]
CATE_HUMAN1.713e-1649.43Cathepsin E OS=Homo sapiens GN=CTSE PE=1 SV=2[more]
PEPA_PIG1.450e-1547.73Pepsin A OS=Sus scrofa GN=PGA PE=1 SV=3[more]
PEPA2_MACFU1.450e-1550.00Pepsin A-2/A-3 OS=Macaca fuscata fuscata PE=1 SV=1[more]
CATE_MOUSE1.450e-1548.28Cathepsin E OS=Mus musculus GN=Ctse PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32201C05EF RVDevelopN Citrus clementina cDNA clone C32201C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920952 ID=FC920952; Name=FC920952; organism=Citrus clementina; type=EST; length=694bp
TCATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGTCTCGAGATGTG
AGTATGGGCGTTGAGAGTGTCGTTCCTGAGAATAATCATAGAGCATCTGG
TGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGCAGTTGTGTGGA
TGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCATTCTTAACTAT
GTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGAGAATCGGCTGT
TGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTTTACGATTGGTG
GAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCAAAGTGGGCGGG
GGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTAGATGTTGCCCC
ACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTATGGGTCCCTACC
ACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTGCTGAAGCCGCG
TAAATAAGTTTGTTTTAAATATGCTCAGTGAACCGTACCTCGTGGAATTT
CAGTTGTTTCTTTAAGATGTTGAAACTAAACCTTAAATAACTGTTCTATG
TAAATGCTCTGATGTATGACAGCTGTTGAGAAGCCCAAAGACGTGGACTT
TGTTTATAATCCGTGCCTGGACTCTGAAAAAAAAAAAAAAAAAA
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