FC920952

Overview
NameFC920952
Unique NameFC920952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_SHEEP (Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.450e-15
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 3
Query:  222 LPSPMGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMG 443
            +P   GE  + C ++SSLP V+  +GGK + L+P+ Y LKV       C+SGF  +D+ PP GPLWILGDVF+G
Sbjct:  291 VPLIQGEYMIPCEKVSSLPQVTLKLGGKDYTLSPEDYTLKVSQAGTTVCLSGFMGMDIPPPGGPLWILGDVFIG 364          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_MACMU (Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 44/88 (50.00%), Postives = 52/88 (59.09%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  V CS +SSLP + FTI G  + L P  YIL+  G     C SGF  +DV    G LWILGDVF+  Y TVFD +N +VG A  A
Sbjct:  305 GEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQSQGS----CTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA4_MACFU (Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.894e-15
Identity = 44/88 (50.00%), Postives = 52/88 (59.09%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  V CS +SSLP + FTI G  + L P  YIL+  G     C SGF  +DV    G LWILGDVF+  Y TVFD +N +VG A  A
Sbjct:  305 GEMVVSCSAISSLPDIVFTINGVQYPLPPSAYILQSQGS----CTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATD_DICDI (Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.220e-15
Identity = 38/82 (46.34%), Postives = 56/82 (68.29%), Query Frame = 3
Query:  252 DCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            DCS +++LP V+ T+ G+ F LTP +Y+L+V      +C+SGF  +++    G  WILGDVF+  Y+TVFD+ N +VGFA A
Sbjct:  301 DCSVINTLPNVTITVAGREFVLTPKEYVLEVTEFGKTECLSGFMGIEL--NMGNFWILGDVFISAYYTVFDFGNKQVGFATA 380          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA1_MACFU (Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.511e-15
Identity = 43/88 (48.86%), Postives = 52/88 (59.09%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  V CS +SSLP + FTI G  + + P  YIL+  G     C SGF  +DV    G LWILGDVF+  Y TVFD +N +VG A  A
Sbjct:  305 GEMVVSCSAISSLPDIVFTINGIQYPVPPSAYILQSQGS----CTSGFQGMDVPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_HUMAN (Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  V CS +SSLP + FTI G  + + P  YIL+  G     CISGF  +++    G LWILGDVF+  Y TVFD +N +VG A  A
Sbjct:  305 GDMVVSCSAISSLPDIVFTINGVQYPVPPSAYILQSEGS----CISGFQGMNLPTESGELWILGDVFIRQYFTVFDRANNQVGLAPVA 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATE_RABIT (Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.094e-14
Identity = 42/91 (46.15%), Postives = 55/91 (60.44%), Query Frame = 3
Query:  228 SPM-GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +PM GE AV+C  L+ +P V+F I G  + L+   Y L         C SGF  LD+ PP GPLWILGDVF+  +++VFD  + RVG A A
Sbjct:  304 TPMDGEYAVECENLNIMPDVTFVINGVPYTLSATAYTLPDFVDGMQFCGSGFQGLDIQPPAGPLWILGDVFIRQFYSVFDRGSNRVGLAPA 394          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_RHIFE (Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.572e-14
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  V CS +++LP + FTI G  + L P  Y+L+   G    C SGF  +D+    G LWILGDVF+  Y TVFD  N +VG A  A
Sbjct:  303 GEMVVSCSAINTLPNIVFTINGVQYPLPPSAYVLQSQQG----CTSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRGNNQVGLAPVA 386          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_BOVIN (Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 4.665e-14
Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  + CS + SLP + FTI G  + + P  YIL+  G     C SGF  +D++   G LWILGDVF+  Y TVFD  N ++G A  A
Sbjct:  289 GEVVISCSSIDSLPDIVFTINGVQYPVPPSAYILQSNG----ICSSGFEGMDISTSSGDLWILGDVFIRQYFTVFDRGNNQIGLAPVA 372          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_RABIT (Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 43/89 (48.31%), Postives = 52/89 (58.43%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  VDC    SLP  +F I G  F L+P  YIL   G    QC+ G  A  ++   G PLWILGDVF+  Y++VFD +N RVGFA  A
Sbjct:  304 GEFLVDCDSTESLPTFTFVINGVEFPLSPSAYILNTDG----QCMVGVEATYLSSQDGEPLWILGDVFLRAYYSVFDMANNRVGFAALA 388          
The following BLAST results are available for this feature:
BLAST of FC920952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CATD_SHEEP1.450e-1548.65Cathepsin D (Fragment) OS=Ovis aries GN=CTSD PE=1 ... [more]
PEPA_MACMU1.894e-1550.00Pepsin A OS=Macaca mulatta GN=PGA PE=2 SV=1[more]
PEPA4_MACFU1.894e-1550.00Pepsin A-4 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
CATD_DICDI4.220e-1546.34Cathepsin D OS=Dictyostelium discoideum GN=ctsD PE... [more]
PEPA1_MACFU5.511e-1548.86Pepsin A-1 OS=Macaca fuscata fuscata GN=PGA PE=1 S... [more]
PEPA_HUMAN2.094e-1446.59Pepsin A OS=Homo sapiens GN=PGA3 PE=1 SV=1[more]
CATE_RABIT2.094e-1446.15Cathepsin E OS=Oryctolagus cuniculus GN=CTSE PE=2 ... [more]
PEPA_RHIFE3.572e-1445.45Pepsin A OS=Rhinolophus ferrumequinum GN=PGA PE=2 ... [more]
PEPA_BOVIN4.665e-1444.32Pepsin A OS=Bos taurus GN=PGA PE=1 SV=2[more]
PEPC_RABIT7.958e-1448.31Gastricsin OS=Oryctolagus cuniculus GN=PGC PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32201C05EF RVDevelopN Citrus clementina cDNA clone C32201C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920952 ID=FC920952; Name=FC920952; organism=Citrus clementina; type=EST; length=694bp
TCATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGTCTCGAGATGTG
AGTATGGGCGTTGAGAGTGTCGTTCCTGAGAATAATCATAGAGCATCTGG
TGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGCAGTTGTGTGGA
TGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCATTCTTAACTAT
GTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGAGAATCGGCTGT
TGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTTTACGATTGGTG
GAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCAAAGTGGGCGGG
GGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTAGATGTTGCCCC
ACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTATGGGTCCCTACC
ACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTGCTGAAGCCGCG
TAAATAAGTTTGTTTTAAATATGCTCAGTGAACCGTACCTCGTGGAATTT
CAGTTGTTTCTTTAAGATGTTGAAACTAAACCTTAAATAACTGTTCTATG
TAAATGCTCTGATGTATGACAGCTGTTGAGAAGCCCAAAGACGTGGACTT
TGTTTATAATCCGTGCCTGGACTCTGAAAAAAAAAAAAAAAAAA
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