FC920952

Overview
NameFC920952
Unique NameFC920952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig814 contig Ccv1_Contig814:62..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_SUNMU (Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.958e-14
Identity = 40/88 (45.45%), Postives = 49/88 (55.68%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  V CS + SLP + FTI G  + L    YIL+    +   C SGF  +D+  P G LWILGDVF+  Y  VFD  N RVG A  A
Sbjct:  304 GQMVVSCSSIQSLPDIVFTINGIQYPLPASAYILQ----NQQDCTSGFQGMDIPTPSGELWILGDVFIRQYFAVFDRGNNRVGLAPVA 387          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI_CANFA (Renin OS=Canis familiaris GN=REN PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.357e-13
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  240 ESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            E  V+C+++ +LP +SF +GG+ + LT   Y+L+   G+   C      LDV PP GP+W+LG  F+  ++T FD  N R+GFA A
Sbjct:  317 EYVVNCNQVPTLPDISFHLGGRAYTLTSKDYVLQDPYGNEDLCTLALHGLDVPPPTGPVWVLGASFIRKFYTEFDRHNNRIGFALA 402          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI2_MOUSE (Renin-2 OS=Mus musculus GN=Ren2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 33/86 (38.37%), Postives = 51/86 (59.30%), Query Frame = 3
Query:  240 ESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            E  V CS++ +LP +SF +GG+ + L+   Y+L+        C     A+D+ PP GP+W+LG  F+  ++T FD  N R+GFA A
Sbjct:  315 EYVVSCSQVPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLCTVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 400          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI1_MOUSE (Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 33/86 (38.37%), Postives = 52/86 (60.47%), Query Frame = 3
Query:  240 ESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            E  V+CS++ +LP +SF +GG+ + L+   Y+L+        C     A+D+ PP GP+W+LG  F+  ++T FD  N R+GFA A
Sbjct:  316 EYVVNCSQVPTLPDISFDLGGRAYTLSSTDYVLQYPNRRDKLCTLALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 401          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_SORUN (Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+ AV CS + +LP + FTI G  + L    YIL+   G    C SGF  +D+    G LWILGDVF+  Y TVFD +N +VG A  A
Sbjct:  304 GQMAVSCSSIKNLPDIVFTINGIQYPLPASAYILQSQEG----CSSGFQGMDIPTSSGELWILGDVFIRQYFTVFDRANNQVGLAPVA 387          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_CANFA (Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 38/88 (43.18%), Postives = 52/88 (59.09%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  + CS ++SLP + FTI G  + L P  YIL+   G    C+SGF  +++    G LWILGDVF+  Y  VFD +N +VG A  A
Sbjct:  303 GQMVISCSAINSLPDIVFTINGIQYPLPPSAYILQSQQG----CVSGFQGMNLPTASGELWILGDVFIRQYFAVFDRANNQVGLAPVA 386          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA_CALJA (Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 40/88 (45.45%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  V CS +SSLP + FTI G  + +    YIL+  GG    C SGF  +++    G LWILGDVF+  Y  VFD +N +VG A  A
Sbjct:  304 GEMVVSCSAISSLPDIVFTINGIQYPVPASAYILQDEGG----CTSGFQGMNIPTAYGELWILGDVFIRQYFAVFDRANNQVGLAPVA 387          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA1_RABIT (Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.024e-13
Identity = 39/89 (43.82%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  234 MGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            +GE+ + CS + SLP + FTI    + L    YILK    +   C+SGF  +++    G LWILGDVF+  Y TVFD +N +VG A AA
Sbjct:  303 LGENIISCSAIDSLPDIVFTINNVQYPLPASAYILK----EDDDCLSGFDGMNLDTSYGELWILGDVFIRQYFTVFDRANNQVGLAAAA 387          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_MOUSE (Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.737e-13
Identity = 42/102 (41.18%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  198 YVNELCDRLPSPMGESA---VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFA 491
            Y+NEL   + +  GE     V C  +SSLP ++F + G  F L+P  YI++  G     C+ G  +L +    G PLWILGDVF+  Y+ VFD  N RVG A
Sbjct:  292 YLNELLQTIGAQEGEYGQYFVSCDSVSSLPTLTFVLNGVQFPLSPSSYIIQEEGS----CMVGLESLSLNAESGQPLWILGDVFLRSYYAVFDMGNNRVGLA 389          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_CAVPO (Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 40/89 (44.94%), Postives = 53/89 (59.55%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  V CS +  LP ++F I G  F L+P  YIL         C+ G  +  V+P  G P+WILGDVF+  Y++V+D +N RVGFA AA
Sbjct:  310 GEYFVSCSSIQDLPTLTFVISGVEFPLSPSAYILS----GENYCMVGLESTYVSPGGGEPVWILGDVFLRSYYSVYDLANNRVGFATAA 394          
The following BLAST results are available for this feature:
BLAST of FC920952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
PEPA_SUNMU7.958e-1445.45Pepsin A OS=Suncus murinus GN=PGA PE=1 SV=2[more]
RENI_CANFA1.357e-1340.70Renin OS=Canis familiaris GN=REN PE=2 SV=1[more]
RENI2_MOUSE3.024e-1338.37Renin-2 OS=Mus musculus GN=Ren2 PE=1 SV=1[more]
RENI1_MOUSE3.024e-1338.37Renin-1 OS=Mus musculus GN=Ren1 PE=1 SV=1[more]
PEPA_SORUN3.024e-1345.45Pepsin A OS=Sorex unguiculatus GN=PGA PE=2 SV=1[more]
PEPA_CANFA3.024e-1343.18Pepsin A OS=Canis familiaris GN=PGA PE=2 SV=1[more]
PEPA_CALJA3.024e-1345.45Pepsin A OS=Callithrix jacchus GN=PGA PE=1 SV=1[more]
PEPA1_RABIT3.024e-1343.82Pepsin II-1 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPC_MOUSE6.737e-1341.18Gastricsin OS=Mus musculus GN=Pgc PE=2 SV=1[more]
PEPC_CAVPO1.149e-1244.94Gastricsin OS=Cavia porcellus GN=PGC PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC32201C05EF RVDevelopN Citrus clementina cDNA clone C32201C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920952 ID=FC920952; Name=FC920952; organism=Citrus clementina; type=EST; length=694bp
TCATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGTCTCGAGATGTG
AGTATGGGCGTTGAGAGTGTCGTTCCTGAGAATAATCATAGAGCATCTGG
TGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGCAGTTGTGTGGA
TGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCATTCTTAACTAT
GTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGAGAATCGGCTGT
TGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTTTACGATTGGTG
GAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCAAAGTGGGCGGG
GGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTAGATGTTGCCCC
ACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTATGGGTCCCTACC
ACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTGCTGAAGCCGCG
TAAATAAGTTTGTTTTAAATATGCTCAGTGAACCGTACCTCGTGGAATTT
CAGTTGTTTCTTTAAGATGTTGAAACTAAACCTTAAATAACTGTTCTATG
TAAATGCTCTGATGTATGACAGCTGTTGAGAAGCCCAAAGACGTGGACTT
TGTTTATAATCCGTGCCTGGACTCTGAAAAAAAAAAAAAAAAAA
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