FC920952

Overview
NameFC920952
Unique NameFC920952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig814 contig Ccv1_Contig814:62..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_SUNMU (Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.501e-12
Identity = 39/89 (43.82%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+ AV+C+ + SLP ++F I G  F L P  Y+L   G     C  G     +    G PLWILGDVF+  Y++V+D  N RVGFA AA
Sbjct:  305 GQLAVNCNSIQSLPTLTFIINGVQFPLPPSAYVLNTNG----YCFLGVEPTYLPSQNGQPLWILGDVFLRSYYSVYDMGNNRVGFATAA 389          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_SORUN (Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  V+C+ + +LP ++F I G  F L P  Y+L   G     C  G     +  P G PLWILGDVF+  Y++V+D  N RVGFA AA
Sbjct:  305 GQMVVNCNNIQNLPTLTFVINGVQFPLLPSAYVLNNNG----YCTLGVEPTYLPSPTGQPLWILGDVFLRSYYSVYDMGNNRVGFATAA 389          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI_SHEEP (Renin OS=Ovis aries GN=REN PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 33/86 (38.37%), Postives = 53/86 (61.63%), Query Frame = 3
Query:  240 ESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            E  V+C+++ +LP +SF +GGK + LT   Y+L+    + + C      +D+ PP GP+W+LG  F+  ++T FD  N R+GFA A
Sbjct:  315 EYVVNCNQMPTLPDISFHLGGKAYTLTSADYVLQDPYNNIS-CTLALHGMDIPPPTGPVWVLGATFIRKFYTEFDRRNNRIGFALA 399          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI_RAT (Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  249 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            V+CS++ +LP +SF +GG+ + L+   Y+ K    +   CI     LD+ PP GP+W+LG  F+  ++T FD  N R+GFA A
Sbjct:  319 VNCSQVPTLPDISFYLGGRTYTLSNMDYVQKNPFRNDDLCILALQGLDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA 401          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA4_RABIT (Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  234 MGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +GE+ + CS + SLP + FTI G  + L    YILK    +   C SG   ++V    G LWILGDVF+  Y TVFD +N ++G A A
Sbjct:  303 LGENVISCSAIDSLPDIVFTINGIQYPLPASAYILK----EDDDCTSGLEGMNVDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAA 386          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA2_RABIT (Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 3
Query:  234 MGESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +GE+ + CS + SLP + FTI G  + L    YILK    +   C SG   ++V    G LWILGDVF+  Y TVFD +N ++G A A
Sbjct:  303 LGENVISCSAIDSLPDIVFTINGIQYPLPASAYILK----EDDDCTSGLEGMNVDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAA 386          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CATE_CAVPO (Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 36/84 (42.86%), Postives = 48/84 (57.14%), Query Frame = 3
Query:  246 AVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            +V C+ L+ +  V+F I G  + L P  Y L         C +GF  L++ PP GPLWILGDVF+  ++ VFD  N RVG A A
Sbjct:  306 SVQCANLNMMLDVTFIINGVPYTLNPTAYTLLDFVDGMQVCSTGFEGLEIQPPAGPLWILGDVFIRQFYAVFDRGNNRVGLAPA 389          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPA3_RABIT (Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.343e-12
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE  V CS + SLP + FTI G  + +    YIL+    +   CISGF  +++    G LWILGDVF+  Y TVFD +N ++G A AA
Sbjct:  304 GEMIVSCSSMYSLPNIVFTINGVQYPVPASAYILE----EDDACISGFEGMNLDTYTGELWILGDVFIRQYFTVFDRANNQLGLAAAA 387          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CARP_NEUCR (Vacuolar protease A OS=Neurospora crassa GN=pep-4 PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.367e-12
Identity = 36/87 (41.38%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            G+  +DC + SSL  V+FT+ G  F L P+ YIL+  G     C+S F  +D+  P GPL ILGD F+  Y++++D     VG A A
Sbjct:  312 GQFTIDCGKKSSLEDVTFTLAGYNFTLGPEDYILEASGS----CLSTFMGMDMPAPVGPLAILGDAFLRKYYSIYDLGADTVGIATA 394          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_MONDO (Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  V+C+ +  +P ++F I G  F L P  Y+    G     C  G  A  +  P G PLWILGDVF+  Y++V+D +N RVGFA +A
Sbjct:  307 GDFMVNCNYIQDMPTITFVINGSQFPLPPSAYVFNNNG----YCRLGIEATYLPSPNGQPLWILGDVFLKEYYSVYDMANNRVGFAYSA 391          
The following BLAST results are available for this feature:
BLAST of FC920952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
PEPC_SUNMU1.501e-1243.82Gastricsin OS=Suncus murinus GN=PGC PE=1 SV=2[more]
PEPC_SORUN1.960e-1242.70Gastricsin OS=Sorex unguiculatus GN=PGC PE=2 SV=1[more]
RENI_SHEEP2.560e-1238.37Renin OS=Ovis aries GN=REN PE=2 SV=1[more]
RENI_RAT2.560e-1239.76Renin OS=Rattus norvegicus GN=Ren1 PE=2 SV=2[more]
PEPA4_RABIT2.560e-1243.18Pepsin II-4 OS=Oryctolagus cuniculus PE=2 SV=1[more]
PEPA2_RABIT2.560e-1243.18Pepsin II-2/3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CATE_CAVPO2.560e-1242.86Cathepsin E OS=Cavia porcellus GN=CTSE PE=1 SV=1[more]
PEPA3_RABIT3.343e-1244.32Pepsin-3 OS=Oryctolagus cuniculus PE=2 SV=1[more]
CARP_NEUCR4.367e-1241.38Vacuolar protease A OS=Neurospora crassa GN=pep-4 ... [more]
PEPC_MONDO7.448e-1240.45Gastricsin OS=Monodelphis domestica GN=PGC PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionC32201C05EF RVDevelopN Citrus clementina cDNA clone C32201C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920952 ID=FC920952; Name=FC920952; organism=Citrus clementina; type=EST; length=694bp
TCATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGTCTCGAGATGTG
AGTATGGGCGTTGAGAGTGTCGTTCCTGAGAATAATCATAGAGCATCTGG
TGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGCAGTTGTGTGGA
TGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCATTCTTAACTAT
GTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGAGAATCGGCTGT
TGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTTTACGATTGGTG
GAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCAAAGTGGGCGGG
GGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTAGATGTTGCCCC
ACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTATGGGTCCCTACC
ACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTGCTGAAGCCGCG
TAAATAAGTTTGTTTTAAATATGCTCAGTGAACCGTACCTCGTGGAATTT
CAGTTGTTTCTTTAAGATGTTGAAACTAAACCTTAAATAACTGTTCTATG
TAAATGCTCTGATGTATGACAGCTGTTGAGAAGCCCAAAGACGTGGACTT
TGTTTATAATCCGTGCCTGGACTCTGAAAAAAAAAAAAAAAAAA
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