FC920952

Overview
NameFC920952
Unique NameFC920952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig814 contig Ccv1_Contig814:62..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CARP_ASPFU (Vacuolar protease A OS=Aspergillus fumigatus GN=pep2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.448e-12
Identity = 35/87 (40.23%), Postives = 52/87 (59.77%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            G+ +++C +  SLP ++FT+ G  F + P  Y L+V G     CIS F  +D   P GPL ILGD F+  +++V+D  N  VG A+A
Sbjct:  315 GQYSIECDKRDSLPDLTFTLAGHNFTIGPYDYTLEVQGS----CISSFMGMDFPEPVGPLAILGDAFLRKWYSVYDLGNNAVGLAKA 397          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEP2B_GADMO (Pepsin-2B OS=Gadus morhua PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.728e-12
Identity = 38/88 (43.18%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            GE   +C+ + SLP ++FTI G    L P  YI     GD A C SG  +  V      LWI GDVF+  Y+T++D +N +VGFA AA
Sbjct:  241 GEMMGNCASVQSLPDITFTINGVKQPLPPSAYI----EGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPAA 324          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_HUMAN (Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.659e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  V+C+ + +LP ++F I G  F L P  YIL   G     C  G     ++   G PLWILGDVF+  Y++V+D  N RVGFA AA
Sbjct:  304 GQFLVNCNSIQNLPSLTFIINGVEFPLPPSSYILSNNG----YCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATAA 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_RAT (Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  198 YVNELCDRLPSPMGESA---VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFA 491
            Y++EL   + +  GE     V C  +SSLP +SF + G  F L+P  YI++    +   C+ G  ++ +    G PLWILGDVF+  Y+ +FD  N +VG A
Sbjct:  292 YLSELLQTIGAQEGEYGEYFVSCDSVSSLPTLSFVLNGVQFPLSPSSYIIQ----EDNFCMVGLESISLTSESGQPLWILGDVFLRSYYAIFDMGNNKVGLA 389          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_MACFU (Gastricsin (Fragment) OS=Macaca fuscata fuscata GN=PGC PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 38/89 (42.70%), Postives = 51/89 (57.30%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  V+C+ + +LP ++F I G  F L P  YIL   G     C  G     ++     PLWILGDVF+  Y++V+D SN RVGFA AA
Sbjct:  293 GQFLVNCNSIQNLPTLTFIINGVEFPLPPSSYILNNNG----YCTVGVEPTYLSAQNSQPLWILGDVFLRSYYSVYDLSNNRVGFATAA 377          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPB_CANFA (Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.167e-11
Identity = 36/86 (41.86%), Postives = 47/86 (54.65%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFA 491
            G   V+C+ + S+P ++F I G    L P  Y+L   G     C  G     +  P G PLWILGDVF+  Y+TVFD +  RVGFA
Sbjct:  306 GNFVVNCNSIQSMPTITFVISGSPLPLPPSTYVLNNNG----YCTLGIEVTYLPSPNGQPLWILGDVFLREYYTVFDMAANRVGFA 387          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI_CALJA (Renin OS=Callithrix jacchus GN=REN PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  249 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            V C+   +LP +SF +GGK + LT   Y+ +        C     A+D+ PP GP W LG  F+  ++T FD  N R+GFA A
Sbjct:  317 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRGNNRIGFALA 399          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CARP_NANOT (Vacuolar protease A OS=Nannizzia otae (strain CBS 113480) GN=PEP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.830e-11
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            G+  +DC++  SLP ++FT+ G  F + P  Y L+V G     CIS F  +D   P GPL ILGD F+  +++V+D     VG A+A
Sbjct:  312 GQYTIDCAKRDSLPDLTFTLSGHNFTIGPYDYTLEVSG----TCISSFMGMDFPEPVGPLAILGDSFLRRWYSVYDLGKGTVGLAKA 394          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI_PANTR (Renin OS=Pan troglodytes GN=REN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  249 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            V C+   +LP +SF +GGK + LT   Y+ +        C     A+D+ PP GP W LG  F+  ++T FD  N R+GFA A
Sbjct:  323 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 405          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI_MACMU (Renin OS=Macaca mulatta GN=REN PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  249 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            V C+   +LP +SF +GGK + LT   Y+ +        C     A+D+ PP GP W LG  F+  ++T FD  N R+GFA A
Sbjct:  323 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 405          
The following BLAST results are available for this feature:
BLAST of FC920952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
CARP_ASPFU7.448e-1240.23Vacuolar protease A OS=Aspergillus fumigatus GN=pe... [more]
PEP2B_GADMO9.728e-1243.18Pepsin-2B OS=Gadus morhua PE=1 SV=1[more]
PEPC_HUMAN1.659e-1142.70Gastricsin OS=Homo sapiens GN=PGC PE=1 SV=1[more]
PEPC_RAT2.167e-1137.25Gastricsin OS=Rattus norvegicus GN=Pgc PE=1 SV=1[more]
PEPC_MACFU2.167e-1142.70Gastricsin (Fragment) OS=Macaca fuscata fuscata GN... [more]
PEPB_CANFA2.167e-1141.86Pepsin B OS=Canis familiaris GN=PGB PE=1 SV=1[more]
RENI_CALJA2.830e-1138.55Renin OS=Callithrix jacchus GN=REN PE=2 SV=1[more]
CARP_NANOT2.830e-1140.23Vacuolar protease A OS=Nannizzia otae (strain CBS ... [more]
RENI_PANTR3.697e-1138.55Renin OS=Pan troglodytes GN=REN PE=3 SV=1[more]
RENI_MACMU3.697e-1138.55Renin OS=Macaca mulatta GN=REN PE=2 SV=2[more]

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Properties
Property NameValue
Genbank descriptionC32201C05EF RVDevelopN Citrus clementina cDNA clone C32201C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920952 ID=FC920952; Name=FC920952; organism=Citrus clementina; type=EST; length=694bp
TCATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGTCTCGAGATGTG
AGTATGGGCGTTGAGAGTGTCGTTCCTGAGAATAATCATAGAGCATCTGG
TGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGCAGTTGTGTGGA
TGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCATTCTTAACTAT
GTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGAGAATCGGCTGT
TGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTTTACGATTGGTG
GAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCAAAGTGGGCGGG
GGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTAGATGTTGCCCC
ACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTATGGGTCCCTACC
ACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTGCTGAAGCCGCG
TAAATAAGTTTGTTTTAAATATGCTCAGTGAACCGTACCTCGTGGAATTT
CAGTTGTTTCTTTAAGATGTTGAAACTAAACCTTAAATAACTGTTCTATG
TAAATGCTCTGATGTATGACAGCTGTTGAGAAGCCCAAAGACGTGGACTT
TGTTTATAATCCGTGCCTGGACTCTGAAAAAAAAAAAAAAAAAA
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