FC920952

Overview
NameFC920952
Unique NameFC920952
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length694
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig814 contig Ccv1_Contig814:62..755. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI_MACFA (Renin OS=Macaca fascicularis GN=REN PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  249 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            V C+   +LP +SF +GGK + LT   Y+ +        C     A+D+ PP GP W LG  F+  ++T FD  N R+GFA A
Sbjct:  323 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 405          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: RENI_HUMAN (Renin OS=Homo sapiens GN=REN PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 32/83 (38.55%), Postives = 45/83 (54.22%), Query Frame = 3
Query:  249 VDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFAEA 497
            V C+   +LP +SF +GGK + LT   Y+ +        C     A+D+ PP GP W LG  F+  ++T FD  N R+GFA A
Sbjct:  323 VKCNEGPTLPDISFHLGGKEYTLTSADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA 405          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_CALJA (Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.697e-11
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  V+C  + +LP ++F I G  F L P  YIL   G     C  G     ++     PLWILGDVF+  Y++VFD  N RVGFA AA
Sbjct:  304 GQFLVNCDSIQNLPTLTFIINGVEFPLPPSSYILSNNG----YCTVGVEPTYLSSQNSQPLWILGDVFLRSYYSVFDLGNNRVGFATAA 388          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: PEPC_RHIFE (Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.305e-11
Identity = 38/89 (42.70%), Postives = 49/89 (55.06%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRG-PLWILGDVFMGPYHTVFDYSNMRVGFAEAA 500
            G+  V+C+ + +LP  +F I G  F L P  YIL   G     C  G     +    G PLWILGDVF+  Y++V+D  N RVGFA AA
Sbjct:  305 GQFFVNCNYIQNLPTFTFIINGVQFPLPPSSYILNNNG----YCTVGVEPTYLPSQNGQPLWILGDVFLRSYYSVYDMGNNRVGFATAA 389          
BLAST of FC920952 vs. ExPASy Swiss-Prot
Match: CARPV_CANAL (Vacuolar aspartic protease OS=Candida albicans GN=APR1 PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.235e-11
Identity = 35/85 (41.18%), Postives = 49/85 (57.65%), Query Frame = 3
Query:  237 GESAVDCSRLSSLPIVSFTIGGKIFDLTPDQYILKVGGGDAAQCISGFSALDVAPPRGPLWILGDVFMGPYHTVFDYSNMRVGFA 491
            G+  VDC++  SLP ++ T  G  F LTP  YIL+V G     CIS F+ +D   P G L I+GD F+  Y++++D     VG A
Sbjct:  335 GQYQVDCAKRDSLPDLTLTFAGYNFTLTPYDYILEVSGS----CISVFTPMDFPQPIGDLAIVGDAFLRKYYSIYDLDKNAVGLA 415          
The following BLAST results are available for this feature:
BLAST of FC920952 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
RENI_MACFA3.697e-1138.55Renin OS=Macaca fascicularis GN=REN PE=2 SV=1[more]
RENI_HUMAN3.697e-1138.55Renin OS=Homo sapiens GN=REN PE=1 SV=1[more]
PEPC_CALJA3.697e-1142.70Gastricsin OS=Callithrix jacchus GN=PGC PE=1 SV=1[more]
PEPC_RHIFE6.305e-1142.70Gastricsin OS=Rhinolophus ferrumequinum GN=PGC PE=... [more]
CARPV_CANAL8.235e-1141.18Vacuolar aspartic protease OS=Candida albicans GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32201C05EF RVDevelopN Citrus clementina cDNA clone C32201C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920952 ID=FC920952; Name=FC920952; organism=Citrus clementina; type=EST; length=694bp
TCATTTGCTCACAGATTGGTTTGTGCACATTTGATGGGTCTCGAGATGTG
AGTATGGGCGTTGAGAGTGTCGTTCCTGAGAATAATCATAGAGCATCTGG
TGGTTTCCATGATGCAATGTGCTCTACTTGTGAGATGGCAGTTGTGTGGA
TGCAGAACCAGCTCAAGCAGAACCAAACACAAGAGCGCATTCTTAACTAT
GTCAATGAGCTCTGTGATCGGTTGCCTAGTCCTATGGGAGAATCGGCTGT
TGACTGTAGCAGATTGTCTTCCTTGCCTATTGTTTCCTTTACGATTGGTG
GAAAGATATTTGACCTTACTCCTGATCAGTACATCCTCAAAGTGGGCGGG
GGAGATGCAGCTCAATGTATAAGTGGATTCTCAGCTCTAGATGTTGCCCC
ACCACGTGGACCTCTCTGGATCTTGGGGGATGTTTTTATGGGTCCCTACC
ACACAGTCTTTGACTACAGCAACATGAGAGTGGGATTTGCTGAAGCCGCG
TAAATAAGTTTGTTTTAAATATGCTCAGTGAACCGTACCTCGTGGAATTT
CAGTTGTTTCTTTAAGATGTTGAAACTAAACCTTAAATAACTGTTCTATG
TAAATGCTCTGATGTATGACAGCTGTTGAGAAGCCCAAAGACGTGGACTT
TGTTTATAATCCGTGCCTGGACTCTGAAAAAAAAAAAAAAAAAA
back to top