FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_ASPOR (Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae GN=cpr6 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 64/139 (46.04%), Postives = 81/139 (58.27%), Query Frame = 1
Query:  100 VPKTAENFLALCASG----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            VPKTAENF ALC             ++ G+IFHR IK FMIQ             SI+G+KF DE  E LKH+   +LSMANSGP TNGSQFFI+    PHL+G + V G VI+G  V+  +E   T   D+P+ ++ I
Sbjct:   31 VPKTAENFRALCTGEKGMGKQGKPLHFKGSIFHRVIKQFMIQGGDFTAFNGTGGESIYGEKFPDENFE-LKHDKPFLLSMANSGPGTNGSQFFITTVPTPHLDGKHVVFGEVINGKSVVRKVENMNT-QADKPVKDVTI 167          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 65/145 (44.83%), Postives = 84/145 (57.93%), Query Frame = 1
Query:   61 NLGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            ++G I  G+  + VPKT ENF+AL     GY Y G+IFHR IK FMIQ             SI+G+ F DE    LKH   G +SMAN+GP+TNGSQFFI+  K   L+G + V G+V+ G  V+  +E   T   DRPL +  I
Sbjct:   50 DVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDE-NFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTI 193          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_MOUSE (Peptidyl-prolyl cis-trans isomerase A OS=Mus musculus GN=Ppia PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 63/135 (46.67%), Postives = 80/135 (59.26%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            LG +   +  D+VPKTAENF AL     G+ Y G+ FHR I GFM Q             SI+G+KF DE    LKH   GILSMAN+GPNTNGSQFFI  AK   L+G + V G+V  G  +++ ME+  + +G
Sbjct:   17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_FELCA (Peptidyl-prolyl cis-trans isomerase A OS=Felis catus GN=PPIA PE=2 SV=3)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 63/135 (46.67%), Postives = 80/135 (59.26%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            LG +   +  D+VPKTAENF AL     G+ Y G+ FHR I GFM Q             SI+G+KF+DE    LKH   GILSMAN+GPNTNGSQFFI  AK   L+G + V G V  G  +++ ME+  + +G
Sbjct:   17 LGRVSFDLFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFDDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGMVKEGMNIVEAMERFGSRNG 150          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_CRIGR (Peptidyl-prolyl cis-trans isomerase A OS=Cricetulus griseus GN=PPIA PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 63/135 (46.67%), Postives = 80/135 (59.26%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            LG +   +  D+VPKTAENF AL     G+ Y G+ FHR I GFM Q             SI+G+KF DE    LKH   GILSMAN+GPNTNGSQFFI  AK   L+G + V G+V  G  +++ ME+  + +G
Sbjct:   17 LGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSSFHRIIPGFMCQGGDFTRHNGTGGRSIYGEKFEDE-NFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNG 150          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAHJ (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1997 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.897e-21
Identity = 64/183 (34.97%), Postives = 90/183 (49.18%), Query Frame = 1
Query:   37 KMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLK-HNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            ++ V +HTN GD+   +  D  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   SL+  N  G LSMAN+GPNTNGSQFF+   K+                            P L+  +TV G++I G   L+ +   + G+ D+P+ ++ I  + +
Sbjct:   15 EIKVAMHTNKGDMTFKLFPDIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGSFEDEF--SLEAFNLYGALSMANAGPNTNGSQFFVVQMKEVPESMVNQLVDGGWPEPIAKAYADNGGTPWLDQKHTVFGQLIEGEATLEDIANTKVGAQDKPVHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CP18D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Arabidopsis thaliana GN=CYP18-4 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.477e-21
Identity = 63/144 (43.75%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   58 TNLGDIKCGIACDEVPKTAENFLALCASG----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            T +G I+  +  D  P TAENF ALC             ++ G+IFHR I GFM Q             SI+G KF DE     KH   GILSMANSGPNTNGSQFFI   K   L+G + V G+V+ G +V+  +EK  + SG
Sbjct:   15 TPIGRIEMELFADTTPNTAENFRALCTGEKGMGKLGKPLHFKGSIFHRVIPGFMCQGGDFTAKNGTGGESIYGAKFKDE-NFIKKHTGAGILSMANSGPNTNGSQFFICTDKTSWLDGKHVVFGQVVKGLDVVKAIEKVGSDSG 157          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIE_DROME (Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster GN=cyp33 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 67/134 (50.00%), Postives = 76/134 (56.72%), Query Frame = 1
Query:   67 GDIKCGIACDEVPKTAENFLALCA--SGY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG 456
            G I   +  D VPKTAENF  LC    GY Y G  FHR I  FM Q             SI+GKKFNDE   +LKHN+ G LSMANSG NTNGSQFFI   K   L+  + V G VI G EV+  ME+  + SG
Sbjct:  153 GRIVMLLRADVVPKTAENFRQLCTHEQGYGYKGCSFHRVIPEFMCQGGDFTNNNGTGGKSIYGKKFNDE-NFNLKHNSFGTLSMANSGANTNGSQFFICTTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSG 285          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 65/138 (47.10%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   94 DEVPKTAENFLALCA-------SGY---YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAE 474
            D VPKTAENF ALC        SG    Y G++FHR IK FMIQ             SI+G+KF DE    LKH    +LSMAN+GP TNGSQFFI+    PHL+G + V G+V+ G  V+  +E  +T S DRP+ +
Sbjct:   27 DIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFTAGNGTGGESIYGEKFEDE-NFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVS-DRPVED 162          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 3.236e-21
Identity = 63/146 (43.15%), Postives = 81/146 (55.48%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRP 465
            +G I   +  D VPKTAENF ALC              ++ G  FHR IK FMIQ             SI+G+KF DE     KH+  G+LSMAN+GPNTNGSQFFI+    PHL+G + V G+VI G  V   +E  +  +G++P
Sbjct:   29 VGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDE-NFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEV-NGEKP 172          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
PPID_ASPOR1.897e-2146.04Peptidyl-prolyl cis-trans isomerase D OS=Aspergill... [more]
PPIC_MOUSE1.897e-2144.83Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIA_MOUSE1.897e-2146.67Peptidyl-prolyl cis-trans isomerase A OS=Mus muscu... [more]
PPIA_FELCA1.897e-2146.67Peptidyl-prolyl cis-trans isomerase A OS=Felis cat... [more]
PPIA_CRIGR1.897e-2146.67Peptidyl-prolyl cis-trans isomerase A OS=Cricetulu... [more]
PPI1_STAHJ1.897e-2134.97Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
CP18D_ARATH2.477e-2143.75Peptidyl-prolyl cis-trans isomerase CYP18-4 OS=Ara... [more]
PPIE_DROME3.236e-2150.00Peptidyl-prolyl cis-trans isomerase E OS=Drosophil... [more]
PPID_RHIOR3.236e-2147.10Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPID_MOUSE3.236e-2143.1540 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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