FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL2_ASPOR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Aspergillus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.495e-30
Identity = 71/158 (44.94%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   52 LHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVI-----HGFEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 510
            + T  GDI   +  +  PK   NF+ L   GYY    FHRNIKGFMIQ            SIWGK FNDE    LKH++RG LSMAN G NTN SQFFI+Y   PHLN  +T+ G VI         + +L       S +RP  +IRI  VTI  +P
Sbjct:  304 ISTTSGDINLELQTEYAPKAVWNFIKLAKKGYYKDVTFHRNIKGFMIQGGDPSGTGRGGESIWGKYFNDEFEGPLKHDSRGTLSMANKGKNTNSSQFFIAYRALPHLNNKHTIFGHVIDDPTPSSTTLNNLETHPVNSSTNRPTPDIRITDVTIFVDP 461          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP4_CAEEL (Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhabditis elegans GN=cyn-4 PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.892e-29
Identity = 65/156 (41.67%), Postives = 91/156 (58.33%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG-DRPLAEIRINRVTIHANP 510
            V L TN G +   +   +VPK  ENF+  C++GYY+ T FHR IK FM+Q            SIW K F+DE      H+ARG+LSMAN G NTNGSQFFI++    +L+  +T+ GR++ G + L  +EK +T  G D P+  + I R  +  +P
Sbjct:  282 VRLVTNFGPLNLELFAPKVPKACENFITHCSNGYYNNTKFHRLIKNFMLQGGDPTGTGHGGESIWDKPFSDEFISGFSHDARGVLSMANKGSNTNGSQFFITFRPCKYLDRKHTIFGRLVGGQDTLTTIEKLETEEGTDVPMVSVVIMRAEVFVDP 437          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL3_EMENI (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Emericella nidulans GN=cyp10 PE=3 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.602e-28
Identity = 86/210 (40.95%), Postives = 108/210 (51.43%), Query Frame = 1
Query:   40 MSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQ-----------------XXXXXXXXXXXXSIW-GKKFNDEIR-ESLKHNARGILSMAN--------------SGPNTNGSQFFISYAKQPHLNGLYTVLGRVIH------GFEVLDLMEKAQTGSG------------DRPLAEIRINRVTIHANPLA 516
            MSVTLHT  GD+K  + C+ VPKTAENF+ALCA+G Y+ T FHR I GFMIQ                             SI+     N EI   +L+HN RGILSMA+              +GP  NGSQFFI++A  PHL+G  TV G+V++      G +VL  +EKA   +             +     +RINRVTIHANP A
Sbjct:    1 MSVTLHTTHGDLKVELFCEAVPKTAENFIALCAAGAYNDTPFHRLIPGFMIQGGDISLGPAANSQGTTPMLPFDDIPKGGTSIYHPSALNQEIHLPALRHNTRGILSMASRPVKNQTAPGSQGATGPTINGSQFFITFAAAPHLDGSSTVFGKVLNLTAEDEGGDVLSKLEKANVKTDKKGKVVQPKENEETEYETLRINRVTIHANPFA 210          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL2_EMENI (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Emericella nidulans GN=cyp8 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 71/158 (44.94%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   52 LHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIH----GFEVLDLMEKAQTG-SGDRPLAEIRINRVTIHANP 510
            + T  GDI   +  +  PK   NF+ L   GYY    FHRNIKGFMIQ            SIWGK FNDE    LKH++RG LSMAN G NTN SQFFI+Y   PHLN  +T+ G VI         L+ +E      + +RP  +IRI  VTI  +P
Sbjct:  315 ISTTSGDINLELHTEYAPKAVWNFIKLAKKGYYKDVTFHRNIKGFMIQGGDPTGTGRGGESIWGKYFNDEFEGPLKHDSRGTLSMANKGKNTNSSQFFIAYRALPHLNLKHTIFGHVIDDPTPSSPTLNKLETHPVNPTTNRPTPDIRIVDVTIFVDP 472          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.092e-28
Identity = 65/139 (46.76%), Postives = 82/139 (58.99%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDR 462
            V L T++G I   +  D  P+T +NF  L   GYYDG  FHR I  FMIQ            SI+G++F DEI   L+H   GILSMAN+GPNTNGSQFFI+ A  P L+G +T+ GRV  G  V+  M   +T + DR
Sbjct:    7 VILDTSMGSIHIELYWDHAPRTCKNFYELAKRGYYDGVSFHRIIADFMIQGGDPTGTGRGGTSIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVKRMGLVKTDANDR 145          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPWD1_PONAB (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Pongo abelii GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 65/153 (42.48%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 498
            S  +HT++GDI   +   E PKT ENF     +GYY+G  FHR IKGFMIQ            SIWG +F DE   +L+H+    LSMAN+G NTNGSQFFI+    P L+  +TV GRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  493 SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPWD1_HUMAN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Homo sapiens GN=PPWD1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 65/153 (42.48%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 498
            S  +HT++GDI   +   E PKT ENF     +GYY+G  FHR IKGFMIQ            SIWG +F DE   +L+H+    LSMAN+G NTNGSQFFI+    P L+  +TV GRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  493 SAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 645          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPWD1_BOVIN (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Bos taurus GN=PPWD1 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.088e-28
Identity = 65/153 (42.48%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 498
            S  +HT++GDI   +   E PKT ENF     +GYY+G  FHR IKGFMIQ            SIWG +F DE   +L+H+    LSMAN+G NTNGSQFFI+    P L+  +TV GRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  491 SAIIHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINITV 643          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL1_MOUSE (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus musculus GN=Ppil1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.951e-28
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +V L T++G I   +     PKT +NF  L   GYY+GT FHR IK FMIQ            SI+GK+F DE+   LK    GIL+MAN+GP+TNGSQFF++ A    L+G +T+ GRV  G  +++ +   +T S DRP+ +++I
Sbjct:   13 NVYLETSMGVIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL1_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo sapiens GN=PPIL1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.951e-28
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +V L T++G I   +     PKT +NF  L   GYY+GT FHR IK FMIQ            SI+GK+F DE+   LK    GIL+MAN+GP+TNGSQFF++ A    L+G +T+ GRV  G  +++ +   +T S DRP+ +++I
Sbjct:   13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
PPIL2_ASPOR8.495e-3044.94Peptidyl-prolyl cis-trans isomerase-like 2 OS=Aspe... [more]
CYP4_CAEEL1.892e-2941.67Peptidyl-prolyl cis-trans isomerase 4 OS=Caenorhab... [more]
PPIL3_EMENI1.602e-2840.95Peptidyl-prolyl cis-trans isomerase-like 3 OS=Emer... [more]
PPIL2_EMENI2.092e-2844.94Peptidyl-prolyl cis-trans isomerase-like 2 OS=Emer... [more]
PPIL1_RHIOR2.092e-2846.76Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
PPWD1_PONAB6.088e-2842.48Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_HUMAN6.088e-2842.48Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPWD1_BOVIN6.088e-2842.48Peptidylprolyl isomerase domain and WD repeat-cont... [more]
PPIL1_MOUSE7.951e-2842.86Peptidyl-prolyl cis-trans isomerase-like 1 OS=Mus ... [more]
PPIL1_HUMAN7.951e-2842.86Peptidyl-prolyl cis-trans isomerase-like 1 OS=Homo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
back to top