FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL1_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos taurus GN=PPIL1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.951e-28
Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +V L T++G I   +     PKT +NF  L   GYY+GT FHR IK FMIQ            SI+GK+F DE+   LK    GIL+MAN+GP+TNGSQFF++ A    L+G +T+ GRV  G  +++ +   +T S DRP+ +++I
Sbjct:   13 NVYLETSMGIIVLELYWKHAPKTCKNFAELARRGYYNGTKFHRIIKDFMIQGGDPTGTGRGGASIYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKI 159          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL2_NEUCR (Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neurospora crassa GN=cyp-8 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.038e-27
Identity = 69/164 (42.07%), Postives = 87/164 (53.05%), Query Frame = 1
Query:   28 VGGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFE-VLDLMEKAQTGSGDRPLAEIRINRVTIHANPLA 516
            +  K  V + TNLG +   +  +  PK   NFL L   GYY    FHR+I+ FMIQ            SIWGK F DE      H+ARGI+SMAN G NTN SQFFI+Y    HL+  +T+  +VI G +  L  ME   T   DRPL +I I  + I  +P A
Sbjct:  326 IKNKGYVRMETNLGPLTLELLPEFAPKAVWNFLRLSEKGYYRDVAFHRSIRNFMIQGGDPSGTGRGGSSIWGKNFEDEFEGPNTHSARGIVSMANKGKNTNSSQFFITYRPASHLDRKHTIFAKVIEGQDTTLTAMENVATDGSDRPLNKIVIKDMIILIDPFA 489          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPWD1_MOUSE (Peptidylprolyl isomerase domain and WD repeat-containing protein 1 OS=Mus musculus GN=Ppwd1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27
Identity = 65/153 (42.48%), Postives = 87/153 (56.86%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTG-SGDRPLAEIRINRVTI 498
            S  +HT++GDI   +   E PKT ENF     +GYY+G  FHR IKGFMIQ            SIWG +F DE   +L+H+    LSMAN+G NTNGSQFFI+    P L+  +TV GRV  G EV+  +   +     D+P  ++ I  +T+
Sbjct:  493 SAIVHTSMGDIHIKLFPVECPKTVENFCVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPWLDNKHTVFGRVSKGMEVVQRIFNVKVNPQTDKPYEDVSIINITV 645          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP15_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizopus oryzae GN=cyp15 PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.313e-27
Identity = 64/152 (42.11%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            S  + T  GDI   +  D  PK  ENF     +GYYD  IFHR IKGFMIQ            SIWG  F DE     +H+    +SMAN+GPNTNGSQFFI+ A    L+  ++V GRV  G +V+  +E A+    ++PL +I+I  + I
Sbjct:  478 SAIIRTTSGDIHMRLFPDAAPKAVENFTTHAKNGYYDNLIFHRVIKGFMIQTGCPFGDGTGGESIWGDDFEDEFSREFRHDRPYTVSMANAGPNTNGSQFFITVAPTTWLDNKHSVFGRVTAGMDVVHSIESAKVDKTNKPLDDIKIINIDI 629          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: BPPI_STRP6 (Putative bifunctional phosphatase/peptidyl-prolyl cis-trans isomerase OS=Streptococcus pyogenes serotype M6 GN=M6_Spy1377 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.731e-27
Identity = 73/180 (40.56%), Postives = 96/180 (53.33%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFF------ISYAKQ---------------------PHLNGLYTVLGRVIH--GFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            VT+ TN GD+   +  D  PKT  NFL L   GYYDG IFHR I  FMIQ            SI+G+ F DE  + L +N RG LSMAN+GPNTNGSQFF      I YAK+                     PHL+  +TV G+++    F+VLDL+   +TG+ D+P  ++ I  + +
Sbjct:  290 VTIKTNHGDMTLVLFPDHAPKTVANFLGLAKEGYYDGIIFHRIIPEFMIQGGDPTGTGMGGQSIYGESFEDEFSDEL-YNLRGALSMANAGPNTNGSQFFIVQNSKIPYAKKELERGGWPTPIAAAYAENGGTPHLDRRHTVFGQLVDETSFQVLDLIAGVETGAQDKPKEDVIIETIEV 468          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIL3_ASPFU (Peptidyl-prolyl cis-trans isomerase-like 3 OS=Aspergillus fumigatus GN=cyp10 PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.958e-26
Identity = 87/211 (41.23%), Postives = 107/211 (50.71%), Query Frame = 1
Query:   40 MSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQ------------------XXXXXXXXXXXXSIW-GKKFNDEIR-ESLKHNARGILSMAN--------------SGPNTNGSQFFISYAKQPHLNGLYTVLGRVIH------GFEVLDLMEKA-----------QTGSGDRPLAE-IRINRVTIHANPLA 516
            MSVTLHT  GD+K  + C+ VP+TAENFLALCA G Y+ T FHR   GFMIQ                              SI+  +  N EI   +L+HNARGILSMA+              +G   NGSQFFI++A  PHL+G  TV G+V++      G +VL  +EKA           Q   G+    E I IN VTIHANP A
Sbjct:    1 MSVTLHTTHGDLKVELFCEAVPQTAENFLALCACGAYNNTPFHRIFPGFMIQGGDISLGPAPGTLNTLKPMLPVNEIPKGGTSIYHPRALNQEIHLPALRHNARGILSMASRPVKDRTAPGSQGATGATVNGSQFFITFAAAPHLDGASTVFGKVLNLSPQDEGGDVLSKLEKAKLKVDKKGRVTQPKEGEEGGYEAIGINSVTIHANPFA 211          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP5_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizopus oryzae GN=cyp5 PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.658e-25
Identity = 69/141 (48.94%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   94 DEVPKTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            D VPKTAENF ALC        SG   +Y G+ FHR I GFM Q             SI+G KFNDE   +LKH  +G+LSMAN+GPNTNGSQFFI++ K P L+G +TV G+++ G +VL+++E+  T SG  P A++ I
Sbjct:   30 DTVPKTAENFRALCTGEKGTGVSGKPLHYKGSHFHRIIPGFMAQGGDFTMGNGRGGESIYGHKFNDE-NFTLKHTGKGVLSMANAGPNTNGSQFFITFDKTPWLDGNHTVFGQLVEGNQVLEILEQHGTQSG-MPTAKVEI 168          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_DICDI (Peptidyl-prolyl cis-trans isomerase D, mitochondrial OS=Dictyostelium discoideum GN=cypD PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.693e-25
Identity = 71/150 (47.33%), Postives = 90/150 (60.00%), Query Frame = 1
Query:   55 HTNLGDIKCGIACDEVPKTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLA 471
            +T LG +   +  D VPKTAENF ALC        SG   +Y G+ FHR IK FM+Q             SI+G+ FNDE    +KH   G LSMAN+G NTNGSQFFI+ A+ PHLNG +TV G V+ GF+++  +E A+T   DRP A
Sbjct:   17 NTPLGRVVFELYNDIVPKTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIKNFMVQGGDFTHGTGIGGESIYGRTFNDE-NFLVKHKI-GCLSMANAGKNTNGSQFFITTAETPHLNGGHTVFGEVVEGFDIVKKVENAETDRSDRPKA 164          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP11_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizopus oryzae GN=cyp11 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.824e-25
Identity = 67/152 (44.08%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCASG-----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +G I   +  D+VPKTAENF ALC              +Y G+IFHR IKGFM Q             SI+G  F DE   S KH+  G+LSMAN GPNT  SQFFI+    PHL+G + V GRV+ G+ V+++ME       DRPL  + I
Sbjct:   17 IGRIVIELFADQVPKTAENFRALCTGEKGIGKVSNMPLHYKGSIFHRIIKGFMCQGGDFTHRTGKGGESIYGANFPDE-SFSRKHDTHGLLSMANRGPNTQTSQFFITTRPTPHLDGKHVVFGRVVSGYNVVEMMENEPVDDQDRPLHNVMI 167          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYPX_USEUD (Peptidyl-prolyl cis-trans isomerase OS=Unspecified eudicot DB-1992 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.403e-24
Identity = 65/140 (46.43%), Postives = 85/140 (60.71%), Query Frame = 1
Query:   97 EVPKTAENFLALCA-------SGY---YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +VPKTAENF ALC        SG    Y+G++FHR I  FM+Q             SI+G KF DE     KH   G+LSMAN+GP TNGSQFFI+    PHL+G + V G+V+ G +V+  +E  QT  GD+PL+E++I
Sbjct:   25 DVPKTAENFRALCTGEKGIGPSGKKMTYEGSVFHRVIPKFMLQGGDFTLGNGRGGESIYGAKFADE-NFIHKHTTPGLLSMANAGPGTNGSQFFITTVATPHLDGKHVVFGKVVEGMDVVRKIEATQTDRGDKPLSEVKI 163          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
PPIL1_BOVIN7.951e-2842.86Peptidyl-prolyl cis-trans isomerase-like 1 OS=Bos ... [more]
PPIL2_NEUCR1.038e-2742.07Peptidyl-prolyl cis-trans isomerase-like 2 OS=Neur... [more]
PPWD1_MOUSE2.313e-2742.48Peptidylprolyl isomerase domain and WD repeat-cont... [more]
CYP15_RHIOR2.313e-2742.11Peptidyl-prolyl cis-trans isomerase cyp15 OS=Rhizo... [more]
BPPI_STRP66.731e-2740.56Putative bifunctional phosphatase/peptidyl-prolyl ... [more]
PPIL3_ASPFU1.958e-2641.23Peptidyl-prolyl cis-trans isomerase-like 3 OS=Aspe... [more]
CYP5_RHIOR1.658e-2548.94Peptidyl-prolyl cis-trans isomerase cyp5 OS=Rhizop... [more]
PPID_DICDI3.693e-2547.33Peptidyl-prolyl cis-trans isomerase D, mitochondri... [more]
CYP11_RHIOR4.824e-2544.08Peptidyl-prolyl cis-trans isomerase cyp11 OS=Rhizo... [more]
CYPX_USEUD1.403e-2446.43Peptidyl-prolyl cis-trans isomerase OS=Unspecified... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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