FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: SDC10_DANRE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Danio rerio GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.394e-24
Identity = 60/157 (38.22%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHG--FEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 510
            V L T+ GDI   +   E PK   NF+ LC  GYYDGTIFHR +  F++Q            SI+G+ F DE    L+ N RG+++MAN+GP+ NGSQFF +  +   LN  +T+ G+V     + +L L + A  G  +RPL   +I    +  +P
Sbjct:   15 VLLKTSAGDIDIELWSKETPKACRNFVQLCMEGYYDGTIFHRMVPEFIVQGGDPTGTGTGGESIYGRPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLADVACDGD-ERPLNPHKIRSTEVLHSP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CP20B_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-2, chloroplastic OS=Arabidopsis thaliana GN=CYP20-2 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.394e-24
Identity = 66/143 (46.15%), Postives = 86/143 (60.14%), Query Frame = 1
Query:   67 GDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            G I  G+  D+VP+T ENF ALC    G+ Y G+ FHR I+ FMIQ             S++G+ F DE    L H   G+LSMAN+GPNTNGSQFFI   K   L+G + V G+VI G EV+ L+E+ +T  GDRP  ++ I
Sbjct:  107 GRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIRDFMIQGGDFEKGNGTGGKSVYGRTFKDE-NFKLSHVGPGVLSMANAGPNTNGSQFFICTIKTSWLDGRHVVFGQVIEGMEVVKLIEEQETDRGDRPRKKVVI 248          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_ASPFU (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus fumigatus GN=cpr2 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.127e-24
Identity = 65/144 (45.14%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            LG I  G+    VPKTAENF AL     G+ Y+G+ FHR IK FMIQ             SI+G+KF DE    L+H  +G+LSMAN+G +TNGSQFFI+    P L+G + V G V+ G+EV++ +E    G GD+P   ++I
Sbjct:   49 LGRIVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKSFMIQGGDFTRGDGTGGKSIYGEKFADE-NFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEVVEQIENVPKGPGDKPAETVKI 191          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 71/163 (43.56%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   28 VGGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +GGK       ++G I   +  D VPKTA+NF +LC        SG   +Y G++FHR IK FMIQ             SI+G KF+DE    +KH    +LSMAN+GPNTNGSQFFI+    PHL+G + V G V++G  V+  +E   T SGDRP  E  I
Sbjct:   19 IGGK-------SVGRITMELYADLVPKTADNFRSLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFTAGDGTGGESIYGNKFDDEAFP-IKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALI 173          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_MYCTU (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium tuberculosis GN=ppiA PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 68/169 (40.24%), Postives = 88/169 (52.07%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALC----------ASG-----YYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVI--HGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            + TLHTN GDIK  +  +  PKT  NF+ L           ASG     +YDG +FHR I+GFMIQ               G KF DE    L+ +   +L+MAN+GP TNGSQFFI+  K PHLN  +T+ G VI      V++ + K  T   DRP   + I  +TI
Sbjct:   16 TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 181          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_MYCBO (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium bovis GN=ppiA PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.083e-24
Identity = 68/169 (40.24%), Postives = 88/169 (52.07%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALC----------ASG-----YYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVI--HGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            + TLHTN GDIK  +  +  PKT  NF+ L           ASG     +YDG +FHR I+GFMIQ               G KF DE    L+ +   +L+MAN+GP TNGSQFFI+  K PHLN  +T+ G VI      V++ + K  T   DRP   + I  +TI
Sbjct:   16 TATLHTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI 181          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_ASHGO (Peptidyl-prolyl cis-trans isomerase D OS=Ashbya gossypii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 70/166 (42.17%), Postives = 94/166 (56.63%), Query Frame = 1
Query:   28 VGGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGY------------YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRIN 486
            +GGK +       G +   +  D  PKTAENF+ LCA               Y G++FHR IKGFM Q             SI+G+KF DE   + KH+   +LSMAN+GPNTNGSQ FI+ A  PHL+G + V G VI G  V+  +E+ +T + DRPLA++RI+
Sbjct:   13 IGGKPA-------GRVVFEVYSDVTPKTAENFVRLCAGDAGECRTKPGVPLCYQGSLFHRVIKGFMCQFGDFTNGDGTGGESIYGEKFEDE-NFARKHDRPFLLSMANAGPNTNGSQCFITCAPTPHLDGKHVVFGEVIQGKRVVRAIERQET-AADRPLADVRID 169          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.333e-24
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            LG +  G+    VPKTAENF AL     G+ Y+G+IFHR I  FMIQ             SI+G +F DE    L H   G+LSMAN+GP++NGSQFFI+  K P L+G + V G V+ G++++  + KA+T + D+PL +++I
Sbjct:   40 LGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDE-NFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKPLEDVKI 182          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: SDC10_XENLA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xenopus laevis GN=sdccag10 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 58/157 (36.94%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQT--GSGDRPLAEIRINRVTIHANP 510
            V L T  G+I   +   E PK   NF+ LC  GYYD TIFHR +  F+IQ            S++GK F DE    L+ N RG+++MAN+GP+ NGSQFF +  +   LN  +T+ G+V  G  + +++  A+   G  +RP+   +I    +  NP
Sbjct:   15 VLLKTTAGEIDIELWSKEAPKACRNFVQLCLEGYYDNTIFHRVVPEFIIQGGDPTGTGTGGESVFGKPFRDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTIYNILRLAEVDIGEDERPVNPHKIKCTEVLFNP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIH_USTMA (Peptidyl-prolyl cis-trans isomerase H (Fragment) OS=Ustilago maydis GN=CYP3 PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 65/153 (42.48%), Postives = 85/153 (55.56%), Query Frame = 1
Query:   58 TNLGDIKCGIACDEVPKTAENFLALCASGY--------YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINR 489
            T  G +KC +  D VP+T+ENF  LC   +        Y  +IFHR IK FM Q             SI+G KF+DE   +LKH+  G+LSMANSGP TNG QFFI+    P L+G + V G+V+ G   L  ME   TG+ +RP   +RI +
Sbjct:    1 TPAGRLKCELFSDIVPRTSENFRQLCTGEFRPNHVPEGYKNSIFHRIIKDFMCQGGDFINADGTGSRSIYGDKFDDE-NFTLKHDKAGLLSMANSGPGTNGCQFFITAQPCPFLDGKHVVFGKVVDGLLTLRKMENVPTGANNRPKMAVRITQ 152          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
SDC10_DANRE2.394e-2438.22Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Da... [more]
CP20B_ARATH2.394e-2446.15Peptidyl-prolyl cis-trans isomerase CYP20-2, chlor... [more]
PPIB_ASPFU3.127e-2445.14Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPID_GIBZE4.083e-2443.56Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]
PPIA_MYCTU4.083e-2440.24Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPIA_MYCBO4.083e-2440.24Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
PPID_ASHGO5.333e-2442.17Peptidyl-prolyl cis-trans isomerase D OS=Ashbya go... [more]
PPIB_SCHPO5.333e-2443.75Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
SDC10_XENLA6.965e-2436.94Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Xe... [more]
PPIH_USTMA6.965e-2442.48Peptidyl-prolyl cis-trans isomerase H (Fragment) O... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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