FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CWC27_RHIOR (Peptidyl-prolyl isomerase cwc27 OS=Rhizopus oryzae GN=cwc27 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 61/157 (38.85%), Postives = 83/157 (52.87%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHG--FEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 510
            V LHT  GDI+  +   E P+   NF+ LC  GYYD TIFHR + GF++Q            S++   F DE    L+ N RG++ +AN+G N NGSQFFI+  +   L   +T+ GRV     F V+ + E  +    +RPL   RI R  I  NP
Sbjct:   15 VILHTTSGDIEIELWGKEAPRATRNFIQLCLEGYYDNTIFHRIVPGFLVQGGDPTGTGQGGESVYEDGFPDEFHSRLRFNRRGLVGVANTGQNDNGSQFFITLDRADELTKRHTLFGRVAGDTLFNVMKMTE-LEIDENERPLYPPRIKRTEIVINP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_EMENI (Peptidyl-prolyl cis-trans isomerase B OS=Emericella nidulans GN=cpr2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 64/145 (44.14%), Postives = 88/145 (60.69%), Query Frame = 1
Query:   61 NLGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +LG I  G+    VP+TAENF AL     G+ Y+G+ FHR IK FMIQ             SI+G KF DE    L+H   G+LSMAN+G +TNGSQFFI+ A  P L+G + V G V+ G++++D ++    G  DRPL +++I
Sbjct:   46 SLGRIVLGLYGKTVPETAENFRALATGEKGFGYEGSNFHRVIKDFMIQGGDFTRGDGTGGKSIYGAKFKDE-NFKLRHTKTGLLSMANAGKDTNGSQFFITTAVTPWLDGKHVVFGEVLEGYDIVDKIQNVPKGRNDRPLKDVKI 189          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP6_RHIOR (Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizopus oryzae GN=cyp6 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.097e-24
Identity = 67/141 (47.52%), Postives = 87/141 (61.70%), Query Frame = 1
Query:   94 DEVPKTAENFLALCA-------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            D VPKTAENF ALC        SG   +Y  + FHR I GFM Q             SI+G+ F DE   +LKH  +G+LSMAN+GPNTNGSQFFI++   P L+G +TV G+++ G +VLDL+E+  + SG  P A+I I
Sbjct:   30 DTVPKTAENFRALCTGEKGKGISGKPLHYKNSYFHRIIPGFMAQGGDFTMGDGRGGESIYGRTFKDE-NFTLKHKGKGLLSMANAGPNTNGSQFFITFVDTPWLDGNHTVFGQIVDGSKVLDLLEQHGSRSG-MPSAKIEI 168          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CWC27_CRYNE (Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus neoformans GN=CWC27 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.188e-23
Identity = 64/158 (40.51%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGP-NTNGSQFFISYAKQPHLNGLYTVLGRVIHG--FEVLDLMEKAQTGSGDRPLAEIRINRVTIHANP 510
            V + T  G+I+  +   E PK   NFLAL   GYYDG IFHR + GF+IQ            S +G+ F DEI   LK N RG+L MAN+G  N+N SQFFI+    P L   +T+ G+++    F VL++     T   +RPL   +I R+ I  NP
Sbjct:   15 VIIDTTAGEIEVELWGKECPKAVRNFLALTMEGYYDGVIFHRVVPGFIIQSGDPTGTGMGGESFYGEPFEDEIHGRLKFNRRGLLGMANNGSRNSNTSQFFITLDAAPELTNKHTMFGKIVGNTIFNVLNI-GNLDTDKEERPLIPPKIRRIHIIENP 171          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_CANGA (Peptidyl-prolyl cis-trans isomerase D OS=Candida glabrata GN=CPR6 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 68/144 (47.22%), Postives = 87/144 (60.42%), Query Frame = 1
Query:   94 DEVPKTAENFLALCA--SGY----------YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSG-DRPLAEIRI 483
            D VPKTAENFL LC   SG           Y G+IFHR IK FMIQ             SI+G+KF DE  E +KH+   +LSMAN+GPNTNGSQ FI+    PHL+G + V G VI G  ++ L+EK QT  G D+P+ ++++
Sbjct:   27 DVVPKTAENFLKLCEGKSGMAKSKPDVPLSYKGSIFHRVIKDFMIQFGDFTNFDGTGGESIYGEKFEDENFE-IKHDKPFLLSMANAGPNTNGSQAFITCVPTPHLDGKHVVFGEVIEGKRLVRLIEKQQTEDGTDKPMHDVKV 169          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIA_MYCLE (Probable peptidyl-prolyl cis-trans isomerase A OS=Mycobacterium leprae GN=ppiA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 67/169 (39.64%), Postives = 89/169 (52.66%), Query Frame = 1
Query:   43 SVTLHTNLGDIKCGIACDEVPKTAENFLALC----------ASG-----YYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVI--HGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            + TLHTN GDIK  +  + VPKT  NF+ L           ASG     +YDG +FHR I+GFMIQ               G KF DE    L+ +   +L+MAN+GP TNGSQFFI+  + PHLN  +T+ G V      +V+D +    T   DRP   + I+ +TI
Sbjct:   16 TATLHTNRGDIKVALFGNHVPKTVANFVGLAQGTKEYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGTGRGGP---GYKFADEFHPELQFDKPYLLAMANAGPGTNGSQFFITVGETPHLNRRHTIFGEVTDPDSQKVVDAISTTATDGNDRPTEPVVIDSITI 181          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: SDC10_MOUSE (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mus musculus GN=Sdccag10 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 59/157 (37.58%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGD--RPLAEIRINRVTIHANP 510
            V L T  GDI   +   E PK   NF+ LC   YYD TIFHR + GF++Q            SI+G  F DE    L+ N RG+++MAN+GP+ NGSQFF +  +   LN  +T+ G+V  G  V +++   +    D  RP    RI    +  NP
Sbjct:   15 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLTEVDIDDEERPRNPHRIKSCEVLFNP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_ASPNG (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus niger GN=cypB PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.647e-23
Identity = 63/144 (43.75%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            LG +  G+    VPKTAENF AL     G+ Y+G+ FHR IK FMIQ             SI+G+KF DE    L+H  +G+LSMAN+G +TNGSQFFI+    P L+G + V G V+ G+E++  +E    G  DRP+  ++I
Sbjct:   48 LGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTRGDGTGGKSIYGEKFADE-NFKLRHTRKGLLSMANAGKDTNGSQFFITTVPTPWLDGRHVVFGEVLEGYEIVAQIENVPKGRSDRPVETVKI 190          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: SDC10_RAT (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Rattus norvegicus GN=Sdccag10 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.457e-23
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGD--RPLAEIRINRVTIHANP 510
            V L T  GDI   +   E PK   NF+ LC   YYD TIFHR + GF++Q            S++G  F DE    L+ N RG+++MAN+GP+ NGSQFF +  +   LN  +T+ G+V  G  V +++   +    D  RP    RI    +  NP
Sbjct:   15 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESVYGAPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLTEVDIDDEERPRNPHRIKSCEVLFNP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_GIBZE (Peptidyl-prolyl cis-trans isomerase B OS=Gibberella zeae GN=CPR2 PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.457e-23
Identity = 61/144 (42.36%), Postives = 88/144 (61.11%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            LG +  G+    VP+T ENF AL     G+ Y+G+ FHR IK FMIQ             SI+G +F DE    LKH  +G+LSMAN+G +TNGSQFFI+      L+G + V G V+ G+E+++ +E ++TG+ DRP+  ++I
Sbjct:   48 LGRVVMGLYGKTVPETTENFRALATGEKGFGYEGSAFHRVIKNFMIQGGDFTKGDGTGGKSIYGDRFKDE-NFKLKHTKKGLLSMANAGRDTNGSQFFITTVVTSWLDGKHVVFGEVLEGYEIIEKIENSKTGAADRPVEAVKI 190          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
CWC27_RHIOR6.965e-2438.85Peptidyl-prolyl isomerase cwc27 OS=Rhizopus oryzae... [more]
PPIB_EMENI9.097e-2444.14Peptidyl-prolyl cis-trans isomerase B OS=Emericell... [more]
CYP6_RHIOR9.097e-2447.52Peptidyl-prolyl cis-trans isomerase cyp6 OS=Rhizop... [more]
CWC27_CRYNE1.188e-2340.51Peptidyl-prolyl isomerase CWC27 OS=Cryptococcus ne... [more]
PPID_CANGA1.552e-2347.22Peptidyl-prolyl cis-trans isomerase D OS=Candida g... [more]
PPIA_MYCLE1.552e-2339.64Probable peptidyl-prolyl cis-trans isomerase A OS=... [more]
SDC10_MOUSE2.647e-2337.58Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Mu... [more]
PPIB_ASPNG2.647e-2343.75Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
SDC10_RAT3.457e-2336.94Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ra... [more]
PPIB_GIBZE3.457e-2342.36Peptidyl-prolyl cis-trans isomerase B OS=Gibberell... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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