FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP8_CAEEL (Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhabditis elegans GN=cyn-8 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.515e-23
Identity = 60/137 (43.80%), Postives = 81/137 (59.12%), Query Frame = 1
Query:  103 PKTAENFLALCAS---------GYYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            P+T ENF A C             Y G++FHR IKGFMIQ             SI+G+ F+DE   +LKH    +LSMAN GP+TNGSQFFI+  + PHL+G + V G VI G EV+  +E  +TG+ D+P+ ++ I
Sbjct:   35 PRTVENFRAFCTGELGKMNGHYASYQGSVFHRVIKGFMIQGGDITHGNGTGGYSIYGRTFDDE-NLALKHKKPYLLSMANRGPDTNGSQFFITSEEVPHLDGKHCVFGEVIKGVEVVKAIENLETGNEDKPVCKVEI 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: SDC10_BOVIN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bos taurus GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.896e-23
Identity = 58/157 (36.94%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGD--RPLAEIRINRVTIHANP 510
            V L T  GDI   +   E PK   NF+ LC   YYD TIFHR + GF++Q            SI+G  F DE    L+ N RG+++MAN+GP+ NGSQFF +  +   LN  +T+ G+V  G  V +++   +    D  RP    +I    +  NP
Sbjct:   15 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGTGGESIYGVPFKDEFHSRLRFNRRGLVAMANAGPHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLTEVDIDDEERPRNSHKIRSCEVLFNP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_ASPOR (Peptidyl-prolyl cis-trans isomerase B OS=Aspergillus oryzae GN=cpr2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 62/144 (43.06%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            LG +  G+    VPKTAENF AL     G+ Y+G+ FHR IK FMIQ             SI+G+KF DE    ++H  +G+LSMAN+G +TNGSQFFI+    P L+G + V G V+ G+EV++ +E      GD+P   ++I
Sbjct:   33 LGRVVLGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKEFMIQGGDFTRGDGTGGKSIYGEKFKDE-NFKIRHTKKGLLSMANAGKDTNGSQFFITTVATPWLDGRHVVFGEVLEGYEVVEAIENVPKVPGDKPQQVVKI 175          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.006e-22
Identity = 63/144 (43.75%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            LG I  G+    VPKTAENF AL     G+ Y+G+ FHR IK FMIQ             SI+G KF DE    L+H  +G+LSMAN+G +TNGSQFFI+ A    L+G + V G V+ G++++D ++    G  DRP  +++I
Sbjct:   48 LGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTNGDGTGGKSIYGNKFEDE-NFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEVLEGYDIVDKIQVVPKGFQDRPTKDVKI 190          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP1_BRUMA (Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia malayi GN=CYP-1 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.314e-22
Identity = 68/161 (42.24%), Postives = 91/161 (56.52%), Query Frame = 1
Query:   40 MSVTLHTNL-GDIKCGIACDEVPKTAENFLALCA--------SG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            + VT+  NL G I   +  D  P+T  NFL LC         SG   +Y G+ FHR IK FMIQ             SI+G  F+DE    +KH+   ++SMAN GPNTNGSQFFI+    PHLN ++ V G+V+ G EV+  +E  +T S +RPLA++ I
Sbjct:   11 LDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDE-EFVMKHDEPFVVSMANKGPNTNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVI 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.716e-22
Identity = 65/144 (45.14%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCAS--GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            LG I  G+    VPKTAENF AL     G+ Y+G+ FHR IK FMIQ             SI+G KF DE    LKH+ +G+LSMAN+G +TNGSQFFI+      L+G + V G V+ G++V++ +E  +TG  D P   I+I
Sbjct:   48 LGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDE-NFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEVLEGYDVVEKIENTKTGPRDAPAEPIKI 190          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_DEBHA (Peptidyl-prolyl cis-trans isomerase D OS=Debaryomyces hansenii GN=CPR6 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.926e-22
Identity = 63/139 (45.32%), Postives = 80/139 (57.55%), Query Frame = 1
Query:   94 DEVPKTAENFLALC--------ASG---YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAE 474
            D VPKTAENF ALC        +SG   +Y G+IFHR IK FM Q             SI+G+KF DE    L H+   +LSMAN+G NTNGSQFFI+    PHLNG + V G VI G  ++  +E+   G  D+P+ +
Sbjct:   31 DVVPKTAENFRALCTGEKGASESSGKQLHYKGSIFHRIIKDFMCQGGDFTHGSGIGGESIYGEKFEDE-NFQLTHDKPFLLSMANAGANTNGSQFFITTVPTPHLNGKHVVFGEVIQGKSIVRQLERCDKGENDKPVED 168          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_CRYNE (Peptidyl-prolyl cis-trans isomerase B OS=Cryptococcus neoformans GN=CPR2 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.926e-22
Identity = 72/172 (41.86%), Postives = 92/172 (53.49%), Query Frame = 1
Query:    4 INSELWFGV--GGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCAS--------GY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            I ++++F +  GGK        LG I  G+    VPKTAENF AL           GY Y+G+ FHR IK FMIQ             SI+G KF DE    LKH   G+LSMAN+G +TNGSQFFI   K   L+  + V G V+ G +V+  ME  +T  GD+P+  I I
Sbjct:   43 ITNKVYFDIEHGGKP-------LGRIVMGLYGKTVPKTAENFRALATGKNSDGEDLGYGYEGSSFHRIIKNFMIQGGDFTKGDGTGGKSIYGSKFPDE-NFKLKHTGPGVLSMANAGRDTNGSQFFICTVKTAWLDNRHVVFGHVLEGMDVVYAMENVKTSRGDKPVEPITI 206          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAS1 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=SSP1821 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.926e-22
Identity = 64/184 (34.78%), Postives = 93/184 (50.54%), Query Frame = 1
Query:   31 GGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFI-------------------------SYAK---QPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G ++ + +HTN GD+   +  D  PKT ENF+    +GYY+G  FHR I  FM+Q            SI+G+ F DE  +    N  G LSMAN+GP+TNGSQFFI                         +YA+    P L+  +TV G++I G + L+ +   + G  D+PL +I I+ + I
Sbjct:   13 GNEIKLIMHTNKGDMTFKLLPDVAPKTVENFVTHAKNGYYNGVTFHRVINDFMVQGGDPTATGMGGESIYGEPFEDEFSKE-AFNIYGALSMANAGPHTNGSQFFIVQMNEVPESMLSQLADGGWPEPIVKAYAETGGTPWLDQKHTVFGQLIEGKDTLEDIANTKVGPQDKPLHDITIDSIEI 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CYP9_CAEBR (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis briggsae GN=cyn-9 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 2.926e-22
Identity = 62/152 (40.79%), Postives = 85/152 (55.92%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALC-----------ASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +G I+  +   E PKT ENF ALC           A  +Y G   HR +K FMIQ             SI+G+ F+DE +  LKH+   +LSMAN GPN+N SQFFI+ A  PH NG + V G VI G EV+D+++  +     +P+A++RI
Sbjct:   19 IGRIEIKLFTSEAPKTCENFRALCTGEVGMAPNNKARLHYKGNEIHRVVKKFMIQGGDITDGDGRGGFSIYGRYFDDE-KFVLKHSKPYLLSMANKGPNSNSSQFFITTAPAPHCNGKHVVFGEVIKGREVVDVLDNLEVDGKSKPIAKVRI 169          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
CYP8_CAEEL4.515e-2343.80Peptidyl-prolyl cis-trans isomerase 8 OS=Caenorhab... [more]
SDC10_BOVIN5.896e-2336.94Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Bo... [more]
PPIB_ASPOR1.006e-2243.06Peptidyl-prolyl cis-trans isomerase B OS=Aspergill... [more]
PPIB_ARTBE1.006e-2243.75Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
CYP1_BRUMA1.314e-2242.24Peptidyl-prolyl cis-trans isomerase 1 OS=Brugia ma... [more]
PPIB_NEUCR1.716e-2245.14Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPID_DEBHA2.926e-2245.32Peptidyl-prolyl cis-trans isomerase D OS=Debaryomy... [more]
PPIB_CRYNE2.926e-2241.86Peptidyl-prolyl cis-trans isomerase B OS=Cryptococ... [more]
PPI1_STAS12.926e-2234.78Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
CYP9_CAEBR2.926e-2240.79Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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