FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 64/149 (42.95%), Postives = 83/149 (55.70%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCA--------SGYYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            LG I  G+    VPKT ENF  L          +  Y G+ FHR IK FMIQ             SI+G++F DE    LKH   G LSMAN+GPNTNG+QFFI+  + P L+G + V G+V+ G  V+  +E  QT S DRP+  ++I
Sbjct:   45 LGRIIIGLFGKTVPKTVENFKQLSIGTTLKDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDE-NFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIENMQTDSRDRPVKSVKI 192          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAAW (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain MW2) GN=MW0836 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAAS (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain MSSA476) GN=SAS0824 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAAR (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain MRSA252) GN=SAR0916 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAAN (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain N315) GN=SA0815 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAAM (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SAV0954 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAAC (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain COL) GN=SACOL0957 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLTDGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAAB (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=SAB0821 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAA8 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_00891 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPI1_STAA3 (Putative peptidyl-prolyl cis-trans isomerase OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_0857 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 3.822e-22
Identity = 65/183 (35.52%), Postives = 88/183 (48.09%), Query Frame = 1
Query:   34 GKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQ----------------------------PHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRINRVTI 498
            G++ V +HTN GD+   +  +  PKT ENF+    +GYYDG  FHR I  FMIQ            SI+G  F DE   +   N  G LSMANSGPNTNGSQFFI   K+                            P L+  +TV G++I G   L+ +   + G  D+PL ++ I  + +
Sbjct:   14 GEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLN-AFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDV 195          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
PPIB_SCHJA3.822e-2242.95Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPI1_STAAW3.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAS3.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAR3.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAN3.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAM3.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAC3.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAAB3.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAA83.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]
PPI1_STAA33.822e-2235.52Putative peptidyl-prolyl cis-trans isomerase OS=St... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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