FC920963

Overview
NameFC920963
Unique NameFC920963
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: SDC10_PONAB (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Pongo abelii GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 57/157 (36.31%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGD--RPLAEIRINRVTIHANP 510
            V L T  GDI   +   E PK   NF+ LC   YYD TIFHR + GF++Q            SI+G  F DE    L+ N RG+++MAN+G + NGSQFF +  +   LN  +T+ G+V  G  V +++  ++    D  RP    +I    +  NP
Sbjct:   15 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDEERPHNPHKIKSCEVLFNP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: SDC10_MACFA (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Macaca fascicularis GN=SDCCAG10 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 57/157 (36.31%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGD--RPLAEIRINRVTIHANP 510
            V L T  GDI   +   E PK   NF+ LC   YYD TIFHR + GF++Q            SI+G  F DE    L+ N RG+++MAN+G + NGSQFF +  +   LN  +T+ G+V  G  V +++  ++    D  RP    +I    +  NP
Sbjct:   15 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDEERPHNPHKIKSCEVLFNP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: SDC10_HUMAN (Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Homo sapiens GN=SDCCAG10 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 57/157 (36.31%), Postives = 81/157 (51.59%), Query Frame = 1
Query:   46 VTLHTNLGDIKCGIACDEVPKTAENFLALCASGYYDGTIFHRNIKGFMIQXXXXXXXXXXXXSIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGD--RPLAEIRINRVTIHANP 510
            V L T  GDI   +   E PK   NF+ LC   YYD TIFHR + GF++Q            SI+G  F DE    L+ N RG+++MAN+G + NGSQFF +  +   LN  +T+ G+V  G  V +++  ++    D  RP    +I    +  NP
Sbjct:   15 VLLKTTAGDIDIELWSKEAPKACRNFIQLCLEAYYDNTIFHRVVPGFIVQGGDPTGTGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFNP 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_KLULA (Peptidyl-prolyl cis-trans isomerase D OS=Kluyveromyces lactis GN=CPR6 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 69/165 (41.82%), Postives = 89/165 (53.94%), Query Frame = 1
Query:   28 VGGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCA--SGY----------YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +GGK +       G I   +  D VPKTAENFL LC   SG+          Y G+IFHR IK FM Q             SI+G+KF DE   +LKH+   +LSMAN+G NTNGSQ FI+    PHL+G + V G VI G  ++  +E   T   D+P  E++I
Sbjct:   14 IGGKPA-------GRIVFELYSDVVPKTAENFLKLCEGNSGFAKSKPDIPLSYKGSIFHRVIKSFMCQFGDFTNFNGTGGESIYGEKFEDE-NFTLKHDKPFLLSMANAGANTNGSQCFITCVPTPHLDGKHVVFGEVIQGKRLVRTIENNATDEADKPAKEVKI 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_CANAL (Peptidyl-prolyl cis-trans isomerase D OS=Candida albicans GN=CPR6 PE=3 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 62/145 (42.76%), Postives = 80/145 (55.17%), Query Frame = 1
Query:   94 DEVPKTAENFLALCASGY-----------YDGTIFHRNIKGFMIQXXXXXXXXXXXX----SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            D VPKTA NF +LC               Y  +IFHR IK FM Q                SI+G+KF DE    L HN   +LSMANSGPNTNGSQFFI+    PHL+G + V G VI G  ++  +E+++ G+ DRP+ + +I
Sbjct:   27 DVVPKTAANFRSLCTGDKGISPKSGKPLSYKDSIFHRVIKDFMCQGGDFTAPSDHLGTGGESIYGEKFEDE-NFKLNHNKPFLLSMANSGPNTNGSQFFITTVPTPHLDGKHVVFGEVIEGKSIVRQLERSEKGANDRPVEDWKI 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPIB1_RHIOR (Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus oryzae GN=cyp8 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.992e-22
Identity = 65/145 (44.83%), Postives = 86/145 (59.31%), Query Frame = 1
Query:   61 NLGDIKCGIACDEVPKTAENF--LALCASGY-YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +LG I  G+    VPKTAENF  LA   +GY Y G+ FHR IK FMIQ             SI+G +F DE    L+H+  G+LSMAN+G +TNGSQFFI+    P L+G + V GRV+ G +V+  +E   TGS  +P  ++ I
Sbjct:   46 SLGRIVLGLYGKTVPKTAENFKQLATGENGYGYKGSTFHRVIKKFMIQGGDFTNHDGTGGKSIYGNRFADE-NFKLRHSTPGLLSMANAGRDTNGSQFFITTVVTPWLDGKHVVFGRVLEGMDVVTKIENTPTGSRSKPSVDVVI 189          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: NKTR_MOUSE (NK-tumor recognition protein OS=Mus musculus GN=Nktr PE=1 SV=3)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCASGY-----------YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +G I   +  D  PKT +NFL LC+              Y G+ FHR +K FMIQ             SI+G  F DE    LKH+   +LSMAN G +TNGSQFFI+    PHL+G++ V G VI GFEV++ +E  +T +  RP A++R+
Sbjct:   20 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRV 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: NKTR_HUMAN (NK-tumor recognition protein OS=Homo sapiens GN=NKTR PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 62/152 (40.79%), Postives = 84/152 (55.26%), Query Frame = 1
Query:   64 LGDIKCGIACDEVPKTAENFLALCASGY-----------YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +G I   +  D  PKT +NFL LC+              Y G+ FHR +K FMIQ             SI+G  F DE    LKH+   +LSMAN G +TNGSQFFI+    PHL+G++ V G VI GFEV++ +E  +T +  RP A++R+
Sbjct:   20 VGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFSEGNGKGGESIYGGYFKDE-NFILKHDRAFLLSMANRGKHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRV 170          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: CP20C_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplastic OS=Arabidopsis thaliana GN=CYP20-3 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 69/166 (41.57%), Postives = 92/166 (55.42%), Query Frame = 1
Query:    4 INSELWFGV--GGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASGY---YDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            + ++++F V  GG+++       G I  G+  + VPKT ENF ALC       Y G+ FHR IK FMIQ             SI+G KF DE   +LKH   GILSMAN+GPNTNGSQFFI   K   L+  + V G+VI G +++  +E  +T + D P    RI
Sbjct:   93 VTNKVYFDVEIGGEVA-------GRIVMGLFGEVVPKTVENFRALCTGEKKYGYKGSSFHRIIKDFMIQGGDFTEGNGTGGISIYGAKFEDE-NFTLKHTGPGILSMANAGPNTNGSQFFICTVKTSWLDNKHVVFGQVIEGMKLVRTLESQETRAFDVPKKGCRI 250          
BLAST of FC920963 vs. ExPASy Swiss-Prot
Match: PPID_YARLI (Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia lipolytica GN=CPR6 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.112e-21
Identity = 63/163 (38.65%), Postives = 89/163 (54.60%), Query Frame = 1
Query:   28 VGGKMSVTLHTNLGDIKCGIACDEVPKTAENFLALCASG----------YYDGTIFHRNIKGFMIQXXXXXXXXXXXX-SIWGKKFNDEIRESLKHNARGILSMANSGPNTNGSQFFISYAKQPHLNGLYTVLGRVIHGFEVLDLMEKAQTGSGDRPLAEIRI 483
            +GGK        +G I   +  D+VPKTAENF ALC             ++ G+ FHR IK FM+Q             SI+G+KF DE      H+   +LSMAN+GPNTNGSQFFI+  + PHL+  + V G+++ G  ++  +E+ +TG  DRP   + I
Sbjct:   12 IGGK-------TIGKIYFELFADKVPKTAENFRALCTGEKGNTQAGIPLHFKGSSFHRVIKDFMVQGGDFTAGNGTGGESIYGEKFPDEAFP-YPHDQPFLLSMANAGPNTNGSQFFITTTETPHLDNKHVVFGKLLSGKGIVRQIERTETGEQDRPKQPVTI 166          
The following BLAST results are available for this feature:
BLAST of FC920963 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 261
Match NameE-valueIdentityDescription
SDC10_PONAB4.992e-2236.31Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Po... [more]
SDC10_MACFA4.992e-2236.31Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ma... [more]
SDC10_HUMAN4.992e-2236.31Peptidyl-prolyl cis-trans isomerase SDCCAG10 OS=Ho... [more]
PPID_KLULA4.992e-2241.82Peptidyl-prolyl cis-trans isomerase D OS=Kluyverom... [more]
PPID_CANAL4.992e-2242.76Peptidyl-prolyl cis-trans isomerase D OS=Candida a... [more]
PPIB1_RHIOR4.992e-2244.83Peptidyl-prolyl cis-trans isomerase B1 OS=Rhizopus... [more]
NKTR_MOUSE8.515e-2240.79NK-tumor recognition protein OS=Mus musculus GN=Nk... [more]
NKTR_HUMAN8.515e-2240.79NK-tumor recognition protein OS=Homo sapiens GN=NK... [more]
CP20C_ARATH8.515e-2241.57Peptidyl-prolyl cis-trans isomerase CYP20-3, chlor... [more]
PPID_YARLI1.112e-2138.65Peptidyl-prolyl cis-trans isomerase D OS=Yarrowia ... [more]

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Properties
Property NameValue
Genbank descriptionC32201D07EF RVDevelopN Citrus clementina cDNA clone C32201D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920963 ID=FC920963; Name=FC920963; organism=Citrus clementina; type=EST; length=722bp
GATATAAATTCTGAGCTTTGGTTTGGCGTAGGCGGTAAGATGTCGGTAAC
TCTACACACTAATCTGGGTGATATTAAGTGCGGGATTGCTTGCGACGAAG
TCCCTAAGACGGCTGAGAATTTTTTGGCACTATGCGCGAGTGGTTACTAC
GATGGGACCATTTTTCACCGGAATATTAAAGGTTTTATGATTCAAGGTGG
AGACCCAACAGGCACTGGAAAAGGCGGAACAAGCATATGGGGCAAGAAGT
TCAATGATGAGATAAGGGAGTCCCTCAAGCATAATGCTAGAGGGATACTG
TCAATGGCCAATAGTGGCCCTAACACTAATGGAAGCCAATTCTTCATCTC
TTATGCAAAGCAGCCCCATCTTAACGGATTGTACACTGTGCTTGGTAGAG
TAATTCATGGGTTCGAAGTTCTTGACCTTATGGAAAAGGCTCAAACTGGA
TCAGGGGACCGGCCACTTGCGGAGATAAGGATCAATCGAGTTACCATACA
TGCTAACCCACTTGCTGTCTAGCTTTGTCTGAAAATTTCTTGTTGTATAA
CATTGTAAAGAGGCTTAGTGTGGAGTGGGAACAGTGACTTACGATTAAAC
TCCCAGTAGACTCTGTACATTTTTCTTTTCCCAGTTATGACTATGGGCTT
GAAGGAAGAAAGTACCGCAGAATTTTATGTAGCATCAAATGGTGAGATTG
ACGATTGAGAAACGTTAGTAAT
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