FC920996

Overview
NameFC920996
Unique NameFC920996
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: CYPD_YEAST (Peptidyl-prolyl cis-trans isomerase D OS=Saccharomyces cerevisiae GN=CPR5 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 81/168 (48.21%), Postives = 99/168 (58.93%), Query Frame = 2
Query:   80 KAFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSS-GRTNKPVVIADCGQL 580
            K +FD+  G +  GRIVM L+   TP+T ENF  L      I +  K + Y  S FHRVIP FM Q            +SI+G+ F DENF  KH  PG LSMAN G  TNGSQFF+ T    WLDGKHVVFG+V++GMDVV  IE V + S     K V+I + G+L
Sbjct:   35 KVYFDINHGDKQIGRIVMGLYGLTTPQTVENFYQLT-----ISRDPK-MGYLNSIFHRVIPNFMIQGGDFTHRSGIGGKSIFGNTFKDENFDVKHDKPGRLSMANRGKNTNGSQFFITTVPCPWLDGKHVVFGEVLDGMDVVHYIENVKTDSRNMPVKEVIIVESGEL 196          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: CYPB_YEAST (Peptidyl-prolyl cis-trans isomerase B OS=Saccharomyces cerevisiae GN=CPR2 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.564e-33
Identity = 82/168 (48.81%), Postives = 100/168 (59.52%), Query Frame = 2
Query:   80 KAFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTA-KTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQ 577
            K FFD+  G +  GRIV+ L+  V P+TA+NF  L T      K G    + GS+FHRVIP FM Q            +SIYG  F DENF  KH   G LSMAN G  TNGSQFF+ T  +  WLDGKHVVFGQVV+GMDVV  I+ V   ++ +  + V IA CG+
Sbjct:   37 KVFFDIEHGEEKVGRIVIGLYGKVCPKTAKNFYKLSTTTNS--KKG----FIGSTFHRVIPNFMVQGGDFTDGTGVGGKSIYGDTFPDENFTLKHDRKGRLSMANRGKDTNGSQFFITTTEEASWLDGKHVVFGQVVDGMDVVNYIQHVSRDANDKPLEAVKIAKCGE 198          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: CYP9_CAEEL (Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhabditis elegans GN=cyn-9 PE=2 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 7.785e-33
Identity = 75/169 (44.38%), Postives = 101/169 (59.76%), Query Frame = 2
Query:   80 KAFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKP-LHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVG-SSSGRTNKPVVIADCGQL 580
            + F D++V     GRI + LF +  P+T ENFRALCTGE G+  + K  LHYK + FHR++  FM Q             SIYG  F DE F  KH+ P +LSMAN GP +N SQFF+ TA     +GKHVVFG+VV+G +VV  I+ +      +    V+I++CG+L
Sbjct:    6 RVFLDISVDENLIGRIEIRLFVEDAPKTCENFRALCTGEVGMTPNNKARLHYKQNEFHRIVKKFMIQGGDITEGDGRGGFSIYGRYFDDEKFKLKHSRPYLLSMANKGPNSNSSQFFITTAAAPHCNGKHVVFGEVVKGQNVVDYIDNLAVDDKSKPLAKVLISNCGEL 174          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: PPIL6_BOVIN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos taurus GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.046e-32
Identity = 69/165 (41.82%), Postives = 95/165 (57.58%), Query Frame = 2
Query:   86 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCGQL 580
            F D+++   P GR++ EL++D  P+T +NF+ LCTG+ G  +SG  LHY GS FHRV+     Q            ESIYG  F DENF   H   G+L M N G  +NGSQF++      +LD K+V FGQ++EG DV+  +E V + + R  +  VI   GQL
Sbjct:  141 FLDISIDLYPIGRLIFELYSDTCPKTCKNFQILCTGKAGFSQSGIKLHYTGSIFHRVVRNGWVQGGDIVAGKGDNGESIYGPTFEDENFSVPHNKRGVLGMVNKGRHSNGSQFYITLQAAPYLDKKYVAFGQLIEGTDVLHHLESVPTENERPIQNCVITASGQL 305          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: PPIL6_HUMAN (Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo sapiens GN=PPIL6 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.608e-32
Identity = 68/163 (41.72%), Postives = 92/163 (56.44%), Query Frame = 2
Query:   86 FFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCG 574
            F D+ +   P GR++ EL+ DV P+T +NF+ LCTG+ G  + G  LHYK S FHR++     Q            ESIYG  F DENF   H   G+L MAN G  +NGSQF++    T +LD K V FGQ++EG +V+K +E V + + R      I D G
Sbjct:  145 FLDICIDSSPIGRLIFELYCDVCPKTCKNFQVLCTGKAGFSQRGIRLHYKNSIFHRIVQNGWIQGGDIVYGKGDNGESIYGPTFEDENFSVPHNKRGVLGMANKGRHSNGSQFYITLQATPYLDRKFVAFGQLIEGTEVLKQLELVPTQNERPIHMCRITDSG 307          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: CYPR_CALVI (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Calliphora vicina GN=NINAA PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.052e-29
Identity = 73/168 (43.45%), Postives = 93/168 (55.36%), Query Frame = 2
Query:   80 KAFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVIADCGQL 580
            K + D+    +P GRIV  LF    P+T  NFR +C   +GI  +     Y GS FHRVI  F+ Q             SIYG  F DE    +H  PG L MAN GP TNG QF+V T   +WL+GKH VFG+V+EGMD V AIE V + +      PV+I +CG++
Sbjct:   27 KIYMDVKHQKKPLGRIVFGLFGKRAPKTVTNFRHICL--RGINGTT----YVGSEFHRVISRFLIQGGDIVNNDGTGSTSIYGDFFQDEALDVEHLRPGYLGMANRGPDTNGCQFYVTTVAAQWLNGKHTVFGKVIEGMDTVYAIEDVKTDTDDHPIDPVIIVNCGEM 188          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: CYPR_DROME (Peptidyl-prolyl cis-trans isomerase, rhodopsin-specific isozyme OS=Drosophila melanogaster GN=ninaA PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.998e-29
Identity = 71/170 (41.76%), Postives = 96/170 (56.47%), Query Frame = 2
Query:   80 KAFFDMTVGGQPAGRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADEN--FVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGR-TNKPVVIADCGQL 580
            + + D+    +P GRI   LF  + P+T  NFR +C   +GI  +     Y GS FHRV+  F+ Q             SIYG  F DE+     +H  PG L MAN GP TNG QF+V T   +WLDGKH VFG+V+EGMD + AIE V + +     +PVVI++CG++
Sbjct:   28 RIYMDVKHNKKPVGRITFGLFGKLAPKTVANFRHICL--RGINGTS----YVGSRFHRVVDRFLVQGGDIVNGDGTGSISIYGDYFPDEDKALAVEHNRPGYLGMANRGPDTNGCQFYVTTVGAKWLDGKHTVFGKVLEGMDTIYAIEDVKTDTDDFPVEPVVISNCGEI 191          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: PPIL1_RHIOR (Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhizopus oryzae GN=cyp3 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.682e-25
Identity = 67/131 (51.15%), Postives = 79/131 (60.31%), Query Frame = 2
Query:  119 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVK 508
            G I +EL+ D  PRT +NF  L           K  +Y G SFHR+I  FM Q             SIYG +FADE N   +HTG GILSMANAGP TNGSQFF+  A T WLDGKH +FG+V +GM+VVK
Sbjct:   14 GSIHIELYWDHAPRTCKNFYELA----------KRGYYDGVSFHRIIADFMIQGGDPTGTGRGGT-SIYGERFADEINPGLQHTGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHTIFGRVSDGMNVVK 133          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: PPIB_TREPA (Probable peptidyl-prolyl cis-trans isomerase OS=Treponema pallidum GN=ppiB PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.270e-24
Identity = 66/133 (49.62%), Postives = 79/133 (59.40%), Query Frame = 2
Query:  119 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAI 514
            G IV+ LF +  P T  NF  L  G   + K G+P  Y+G +FHRVI  FM Q                G +F DE +   +H  PG+LSMANAGPGTNGSQFF+    T WLDGKH VFG+VVEGM+VV AI
Sbjct:   49 GTIVLSLFFEKAPLTVCNFVGLAEGTLAVCK-GRPF-YQGLTFHRVIKDFMIQGGDPQGNGTGGP----GYQFPDECDPALRHDSPGVLSMANAGPGTNGSQFFITHVATPWLDGKHTVFGKVVEGMEVVHAI 175          
BLAST of FC920996 vs. ExPASy Swiss-Prot
Match: PPIL1_SCHPO (Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizosaccharomyces pombe GN=ppi1 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.965e-24
Identity = 67/150 (44.67%), Postives = 86/150 (57.33%), Query Frame = 2
Query:  119 GRIVMELFADVTPRTAENFRALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQXXXXXXXXXXXXESIYGSKFADE-NFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGS-SSGRTNKPVVI 562
            G+I++EL+ +  P+T +NF  L           K  +Y G  FHRVIP F+ Q             SIYG KF DE +    HTG GILSMANAGP TN SQFF+  A T WLDGKH +FG+VV G+ V K +  + + SS R  +P+ I
Sbjct:   11 GKILIELYTEHAPKTCQNFYTLA----------KEGYYDGVIFHRVIPDFVIQGGDPTGTGRGGT-SIYGDKFDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHTIFGRVVSGLSVCKRMGLIRTDSSDRPIEPLKI 149          
The following BLAST results are available for this feature:
BLAST of FC920996 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
CYPD_YEAST4.564e-3348.21Peptidyl-prolyl cis-trans isomerase D OS=Saccharom... [more]
CYPB_YEAST4.564e-3348.81Peptidyl-prolyl cis-trans isomerase B OS=Saccharom... [more]
CYP9_CAEEL7.785e-3344.38Peptidyl-prolyl cis-trans isomerase 9 OS=Caenorhab... [more]
PPIL6_BOVIN5.046e-3241.82Peptidyl-prolyl cis-trans isomerase-like 6 OS=Bos ... [more]
PPIL6_HUMAN8.608e-3241.72Peptidyl-prolyl cis-trans isomerase-like 6 OS=Homo... [more]
CYPR_CALVI1.052e-2943.45Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
CYPR_DROME3.998e-2941.76Peptidyl-prolyl cis-trans isomerase, rhodopsin-spe... [more]
PPIL1_RHIOR2.682e-2551.15Peptidyl-prolyl cis-trans isomerase-like 1 OS=Rhiz... [more]
PPIB_TREPA2.270e-2449.62Probable peptidyl-prolyl cis-trans isomerase OS=Tr... [more]
PPIL1_SCHPO2.965e-2444.67Peptidyl-prolyl cis-trans isomerase ppi1 OS=Schizo... [more]

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Properties
Property NameValue
Genbank descriptionC32201G09EF RVDevelopN Citrus clementina cDNA clone C32201G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC920996 ID=FC920996; Name=FC920996; organism=Citrus clementina; type=EST; length=698bp
GCCAACAATCACCAAATCAGAAGTCCGTGTTTAGTTTGTTTTTTTCTCTC
CAATCAACCAATCAAAAATGCCAAACCCCAAAGCGTTCTTCGACATGACC
GTCGGCGGTCAGCCCGCCGGCAGGATCGTGATGGAGCTCTTCGCCGATGT
CACCCCCCGAACCGCCGAGAACTTCCGCGCCCTCTGCACCGGCGAGAAAG
GCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGGGCTCGTCCTTCCAC
CGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGACTTCACCGCCGGAAA
CGGAACCGGAGGCGAATCAATCTACGGCTCAAAATTCGCCGATGAGAACT
TCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCATGGCGAATGCCGGA
CCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACGGCCAAGACCGAGTG
GCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGTCGAAGGAATGGACG
TCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCGGAAGGACCAACAAG
CCCGTCGTGATCGCTGATTGCGGTCAATTGTCTTAGATTTGATCATGATA
ATGATCGCCATCATCACGAGCCGTCTGATCGCGATCGTGATGGTGATTAT
GTTATCTATTATTATGTGGCCGTGTCTGTAGGACTTTTATCTTTATCT
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