FC921002

Overview
NameFC921002
Unique NameFC921002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_CRYNE (Autophagy-related protein 8 OS=Cryptococcus neoformans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            FKDE  F +R  E+  I  KY DR+PVI E+  K+D+P ++KKK+LVP D++VGQF++++  R+ L P KA+F+FV D LP TA LM S+Y+  KDEDGFLY+ Y+SE TFG
Sbjct:    6 FKDEHPFDKRKAEAERIRQKYQDRIPVICEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLAPEKAIFIFVDDILPPTAALMSSIYDEHKDEDGFLYVLYASENTFG 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            SFK E    +R  ES  I  KY DR+PVI E+  K D+P+++KKK+LVP D++VGQF++++  R+ L+P KA+FVFVK+TLP TA+LM ++YE  KDEDGFLYM YS E TFG
Sbjct:    5 SFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 8.246e-32
Identity = 64/113 (56.64%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            SFK E    +R  ES  I  KY DR+PVI E+  K D+P+++KKK+LVP D++VGQF++++  R+ L+P KA+FVFVK+TLP TA+LM ++YE  KDEDGFLYM YS E TFG
Sbjct:    5 SFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 62/113 (54.87%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            SFK E    +R  E+  I  KYPDR+PVI E+  ++D+PD++KKK+LVP D++VGQF++++  R+ L+  KA+F+FVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct:    5 SFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.077e-31
Identity = 62/113 (54.87%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            SFK E    +R  E+  I  KYPDR+PVI E+  ++D+PD++KKK+LVP D++VGQF++++  R+ L+  KA+F+FVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct:    5 SFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_SCHPO (Autophagy-related protein 8 OS=Schizosaccharomyces pombe GN=atg8 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.407e-31
Identity = 59/112 (52.68%), Postives = 85/112 (75.89%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            FKD+F+F +R  ES+ I  KYPDR+PVI E+  K+D+  ++KKK+LVP D++VGQF++++  R+ L+P KA+F+F+ + LP TA LM ++YE  K EDGFLY+ YS E TFG
Sbjct:    5 FKDDFSFEKRKTESQRIREKYPDRIPVICEKVDKSDIAAIDKKKYLVPSDLTVGQFVYVIRKRIKLSPEKAIFIFIDEILPPTAALMSTIYEEHKSEDGFLYITYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_USTMA (Autophagy-related protein 8 OS=Ustilago maydis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 59/113 (52.21%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +FK+E +F +R  E+  I  KYPDR+PVI E+  + D+P ++KKK+LVP D++VGQF++++  R+ L P KA+F+FV + LP TA LM ++YE  KDEDGFLY+ YS E TFG
Sbjct:    4 AFKNEHSFEKRKAEAERIRQKYPDRIPVICEKADRTDIPTIDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPATAALMSAIYEEHKDEDGFLYVSYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_LACBI (Autophagy-related protein 8 OS=Laccaria bicolor GN=ATG8 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 60/114 (52.63%), Postives = 82/114 (71.93%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYE 424
            FKDE  F +R  E+  I  KYPDR+PVI E+  + D+P ++KKK+LVP D++VGQF++++  R+ L P KA+F+FV + LP TA LM ++YE  KDED FLY+ YS E TFG E
Sbjct:    5 FKDEHPFEKRKAEAERIRQKYPDRIPVICEKADRTDIPTIDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHKDEDNFLYVSYSGENTFGQE 118          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_EMENI (Autophagy-related protein 8 OS=Emericella nidulans GN=atg8 PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.837e-31
Identity = 61/112 (54.46%), Postives = 83/112 (74.11%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            FKDE  F +R  E+  I AKY DR+PVI E+  K+D+  ++KKK+LVP D++VGQF++++  R+ L+P KA+F+FV + LP TA LM S+YE  KDEDGFLY+ YS E TFG
Sbjct:    5 FKDEHPFEKRKAEAERIRAKYADRIPVICEKVEKSDIATIDKKKYLVPADLTVGQFVYVIRKRIKLSPEKAIFIFVDEVLPPTAALMSSIYEEHKDEDGFLYITYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.399e-31
Identity = 63/113 (55.75%), Postives = 84/113 (74.34%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            SFK       R+ ES  I AKYP+RVPVI E+  ++D+PD++KKK+LVP D+++GQF++++  R+ L   KA+FVFVK+TLP TA LM ++YE  KDEDGFLYM YS E TFG
Sbjct:    5 SFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117          
The following BLAST results are available for this feature:
BLAST of FC921002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ATG8_CRYNE8.246e-3254.46Autophagy-related protein 8 OS=Cryptococcus neofor... [more]
ATG8A_ORYSJ8.246e-3256.64Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI8.246e-3256.64Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8C_ORYSJ1.077e-3154.87Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI1.077e-3154.87Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8_SCHPO1.407e-3152.68Autophagy-related protein 8 OS=Schizosaccharomyces... [more]
ATG8_USTMA1.837e-3152.21Autophagy-related protein 8 OS=Ustilago maydis GN=... [more]
ATG8_LACBI1.837e-3152.63Autophagy-related protein 8 OS=Laccaria bicolor GN... [more]
ATG8_EMENI1.837e-3154.46Autophagy-related protein 8 OS=Emericella nidulans... [more]
ATG8B_ARATH2.399e-3155.75Autophagy-related protein 8b OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionC32201H06EF RVDevelopN Citrus clementina cDNA clone C32201H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921002 ID=FC921002; Name=FC921002; organism=Citrus clementina; type=EST; length=682bp
GAGAGTTGACGGGTAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAGTT
GAGACGATACGGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACA
TTCGGGCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGA
TCGAGTCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATA
TGGAAAAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTT
ATTCACATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTT
TGTATTTGTGAAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAG
TCTATGAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGC
AGTGAGAAAACCTTTGGTTATGAAAGAATTCAGACTTGTTAATACTTGAA
CTTTGTTCATGGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGT
GAAATGATGTATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCT
TAGTTTATTCTGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGAT
ATAACTTGCGTGTGGATATAACTTATGATTCCATCAACCTGCTTTGACGT
TTCATATGCAAAAAAAAAAAAAAAAAAAAAAA
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