FC921002

Overview
NameFC921002
Unique NameFC921002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_YEAST (Autophagy-related protein 8 OS=Saccharomyces cerevisiae GN=ATG8 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 56/113 (49.56%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +FK E+ F +R  ES  I  ++ +R+PVI E+  K+D+P+++K+K+LVP D++VGQF++++  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct:    4 TFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_YEAS7 (Autophagy-related protein 8 OS=Saccharomyces cerevisiae (strain YJM789) GN=ATG8 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 56/113 (49.56%), Postives = 85/113 (75.22%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +FK E+ F +R  ES  I  ++ +R+PVI E+  K+D+P+++K+K+LVP D++VGQF++++  R+ L P KA+F+FV DTLP TA LM ++Y+  KD+DGFLY+ YS E TFG
Sbjct:    4 TFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_PICAN (Autophagy-related protein 8 OS=Pichia angusta GN=ATG8 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.653e-30
Identity = 57/112 (50.89%), Postives = 84/112 (75.00%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            FKDE  F +R  E+  I  K+ DR+PVI E+  ++D+P+++K+K+LVP D++VGQF++++  R+ L   KA+F+FV D LP TA+LM ++YE +KDEDGFLY+ YS E TFG
Sbjct:    5 FKDEHPFERRKAEASRIRGKFLDRIPVICEKVEESDIPEIDKRKYLVPSDLTVGQFVYVIRKRIQLPSEKAIFIFVNDILPPTASLMSTIYEQYKDEDGFLYILYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_PICST (Autophagy-related protein 8 OS=Pichia stipitis GN=ATG8 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.719e-29
Identity = 57/115 (49.57%), Postives = 83/115 (72.17%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYER 427
            FKDE  F +R  E+  I  ++ DRVPVI E+   +D+P+++K+K+LVP D+SVGQF++++  R+ L   KA+F+FV D LP TA L+ ++YE  KDEDGFLY+ YS E TFG ++
Sbjct:    5 FKDEHPFEKRQAEATRIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLSVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFGQKK 119          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_PICPA (Autophagy-related protein 8 OS=Pichia pastoris GN=ATG8 PE=1 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            FKDE  F +R  E+  I  K+ DR+PVI E+  K+D+P+++K+K+LVP D++VGQF++++  R+ +   KA+F+F+ D LP TA LM  VYE  KDEDGFLY+ YS E TFG
Sbjct:    5 FKDEHPFEKRKAEAMRIRYKFADRIPVICEKVEKSDIPEVDKRKYLVPCDLTVGQFVYVIRKRIKIPSEKAIFIFIDDILPPTAALMSKVYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8F_ARATH (Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 58/114 (50.88%), Postives = 81/114 (71.05%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            SFK E    +R  E+  I  KYPDR+PVI E+  K+D+P ++KKK+LVP D++VGQF++++  R+ L+  KA+F+FV + LP    LM SVYE  KD+DGFLY+ YS E TFG+
Sbjct:    5 SFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGF 118          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8E_ARATH (Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.246e-29
Identity = 61/122 (50.00%), Postives = 85/122 (69.67%), Query Frame = 2
Query:   65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYERI 430
            M K   FK +  F +R  E+  I  KYPDR+PVI E+  K+++P+++KKK+LVP D++VGQF++++  R+ L+  KA+F+FV + LP T  LM SVYE  KDEDGFLY+ YS E TFG   I
Sbjct:    1 MNKGSIFKMDDDFEKRKAEAGRIREKYPDRIPVIVEKAEKSEVPNIDKKKYLVPSDLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGELMSSVYEDKKDEDGFLYITYSGENTFGASSI 122          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_CANAL (Autophagy-related protein 8 OS=Candida albicans GN=ATG8 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.534e-29
Identity = 56/112 (50.00%), Postives = 81/112 (72.32%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            FKDE  F +R  E+  I  ++ DRVPVI E+   +D+P+++K+K+LVP D++VGQF++++  R+ L   KA+F+FV D LP TA L+ ++YE  KDEDGFLY+ YS E TFG
Sbjct:    5 FKDEHPFEKRQAEAARIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDEDGFLYVLYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_LODEL (Autophagy-related protein 8 OS=Lodderomyces elongisporus GN=ATG8 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.456e-28
Identity = 55/112 (49.11%), Postives = 81/112 (72.32%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            FKDE  F +R  E+  I  ++ DRVPVI E+   +D+P+++K+K+LVP D++VGQF++++  R+ L   KA+F+FV D LP TA L+ ++YE  KD+DGFLY+ YS E TFG
Sbjct:    5 FKDEHPFEKRQAEAARIAQRFKDRVPVICEKVENSDIPEIDKRKYLVPVDLTVGQFVYVIRKRIKLPSEKAIFIFVNDILPPTAALISTIYEEHKDDDGFLYVLYSGENTFG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_DEBHA (Autophagy-related protein 8 OS=Debaryomyces hansenii GN=ATG8 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.243e-28
Identity = 55/112 (49.11%), Postives = 80/112 (71.43%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            FKDE  F +R  E+  I  ++ DR+PVI E+   +D+ +++K+K+LVP D+SVGQF++++  R+ L   KA+F+F+ D LP TA LM ++YE  KDEDGFLY+ YS E TFG
Sbjct:    5 FKDEHPFEKRKAEATRITQRFNDRLPVICEKAENSDIQEIDKRKYLVPGDLSVGQFVYVIRKRIKLPSEKAIFIFINDILPPTAALMSTIYEEHKDEDGFLYVLYSGENTFG 116          
The following BLAST results are available for this feature:
BLAST of FC921002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ATG8_YEAST2.653e-3049.56Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_YEAS72.653e-3049.56Autophagy-related protein 8 OS=Saccharomyces cerev... [more]
ATG8_PICAN2.653e-3050.89Autophagy-related protein 8 OS=Pichia angusta GN=A... [more]
ATG8_PICST1.719e-2949.57Autophagy-related protein 8 OS=Pichia stipitis GN=... [more]
ATG8_PICPA2.246e-2950.89Autophagy-related protein 8 OS=Pichia pastoris GN=... [more]
ATG8F_ARATH2.246e-2950.88Autophagy-related protein 8f OS=Arabidopsis thalia... [more]
ATG8E_ARATH2.246e-2950.00Autophagy-related protein 8e OS=Arabidopsis thalia... [more]
ATG8_CANAL6.534e-2950.00Autophagy-related protein 8 OS=Candida albicans GN... [more]
ATG8_LODEL1.456e-2849.11Autophagy-related protein 8 OS=Lodderomyces elongi... [more]
ATG8_DEBHA3.243e-2849.11Autophagy-related protein 8 OS=Debaryomyces hansen... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32201H06EF RVDevelopN Citrus clementina cDNA clone C32201H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921002 ID=FC921002; Name=FC921002; organism=Citrus clementina; type=EST; length=682bp
GAGAGTTGACGGGTAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAGTT
GAGACGATACGGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACA
TTCGGGCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGA
TCGAGTCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATA
TGGAAAAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTT
ATTCACATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTT
TGTATTTGTGAAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAG
TCTATGAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGC
AGTGAGAAAACCTTTGGTTATGAAAGAATTCAGACTTGTTAATACTTGAA
CTTTGTTCATGGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGT
GAAATGATGTATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCT
TAGTTTATTCTGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGAT
ATAACTTGCGTGTGGATATAACTTATGATTCCATCAACCTGCTTTGACGT
TTCATATGCAAAAAAAAAAAAAAAAAAAAAAA
back to top