FC921002

Overview
NameFC921002
Unique NameFC921002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8G_ARATH (Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.224e-28
Identity = 54/113 (47.79%), Postives = 82/113 (72.57%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            SF+ +  F +R  E+  I  KY DRVPVI E+  K+D+P+++KKK+LVP D++VGQF++++  R+ L+  KA+F+FV + LP T  +M ++Y+  K+EDGFLY+ YS E TFG
Sbjct:    5 SFRQDHDFEKRKAEALRIREKYSDRVPVIVEKSEKSDIPNIDKKKYLVPADLTVGQFVYVIRKRIQLSAEKAIFIFVDNVLPPTGAMMSTIYDENKEEDGFLYVTYSGENTFG 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL2_RAT (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Rattus norvegicus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            FK++ +   R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+  R+ L   KA+F+FV  T+PQ++  M  +YE  KDEDGFLY+ YS E TFG+
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL2_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Mus musculus GN=Gabarapl2 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            FK++ +   R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+  R+ L   KA+F+FV  T+PQ++  M  +YE  KDEDGFLY+ YS E TFG+
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL2_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Homo sapiens GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            FK++ +   R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+  R+ L   KA+F+FV  T+PQ++  M  +YE  KDEDGFLY+ YS E TFG+
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL2_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 2 OS=Bos taurus GN=GABARAPL2 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.362e-26
Identity = 56/113 (49.56%), Postives = 80/113 (70.80%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            FK++ +   R  ES +I AKYPDRVPVI E+ S + + D++K+K+LVP D++V QF+ I+  R+ L   KA+F+FV  T+PQ++  M  +YE  KDEDGFLY+ YS E TFG+
Sbjct:    5 FKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFGF 117          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL1_PONAB (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Pongo abelii GN=GABARAPL1 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 53/112 (47.32%), Postives = 77/112 (68.75%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K++  F  R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +YE  ++ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDYFLYVAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL1_XENTR (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus tropicalis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K++  F  R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL1_XENLA (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Xenopus laevis GN=gabarapl1 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K++  F  R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL1_RAT (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Rattus norvegicus GN=Gabarapl1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K++  F  R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL1_MOUSE (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Mus musculus GN=Gabarapl1 PE=2 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K++  F  R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of FC921002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
ATG8G_ARATH7.224e-2847.79Autophagy-related protein 8g OS=Arabidopsis thalia... [more]
GBRL2_RAT1.362e-2649.56Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_MOUSE1.362e-2649.56Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_HUMAN1.362e-2649.56Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL2_BOVIN1.362e-2649.56Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_PONAB5.177e-2647.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENTR1.153e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_XENLA1.153e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_RAT1.153e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_MOUSE1.153e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]

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Properties
Property NameValue
Genbank descriptionC32201H06EF RVDevelopN Citrus clementina cDNA clone C32201H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921002 ID=FC921002; Name=FC921002; organism=Citrus clementina; type=EST; length=682bp
GAGAGTTGACGGGTAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAGTT
GAGACGATACGGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACA
TTCGGGCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGA
TCGAGTCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATA
TGGAAAAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTT
ATTCACATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTT
TGTATTTGTGAAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAG
TCTATGAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGC
AGTGAGAAAACCTTTGGTTATGAAAGAATTCAGACTTGTTAATACTTGAA
CTTTGTTCATGGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGT
GAAATGATGTATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCT
TAGTTTATTCTGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGAT
ATAACTTGCGTGTGGATATAACTTATGATTCCATCAACCTGCTTTGACGT
TTCATATGCAAAAAAAAAAAAAAAAAAAAAAA
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