FC921002

Overview
NameFC921002
Unique NameFC921002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL1_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Homo sapiens GN=GABARAPL1 PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K++  F  R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL1_CAVPO (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Cavia porcellus GN=GABARAPL1 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K++  F  R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL1_BOVIN (Gamma-aminobutyric acid receptor-associated protein-like 1 OS=Bos taurus GN=GABARAPL1 PE=3 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 1.153e-25
Identity = 53/112 (47.32%), Postives = 76/112 (67.86%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K++  F  R +E  +I  KYPDRVPVI E+  KA +PD++K+K+LVP D++VGQF  ++  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS E  +G
Sbjct:    5 YKEDHPFEYRKKEGEKIRKKYPDRVPVIVEKAPKARVPDLDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDYFLYVAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8_DICDI (Autophagy-related protein 8 OS=Dictyostelium discoideum GN=atg8 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.506e-25
Identity = 56/121 (46.28%), Postives = 85/121 (70.25%), Query Frame = 2
Query:   65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLT---PGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            M  + SFK++    +R E +  I +KY DR+PVI E+  ++D PD++KKK+LVP D++VG+F++ +  R H+T     KA+++FV +T+P TA L+  +YE +KDEDGFLY+ YS E TFG
Sbjct:    1 MVHVSSFKNDHPLDKRREVAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVGKFVYEI--RKHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFG 119          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: LGG1_CAEEL (Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.275e-24
Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 2
Query:   80 SFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGYE 424
            ++K+E  F +R  E  +I  KYPDR+PVI E+  K+ L D++KKK+LVP D++VGQF  ++  R+ L P  ALF FV + +PQT T M  +Y+   +ED FLY+ YS E  +G E
Sbjct:    4 AYKEENNFEKRRAEGDKIRRKYPDRIPVIVEKAPKSKLHDLDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDLFLYIAYSDESVYGGE 118          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRL3_HUMAN (Gamma-aminobutyric acid receptor-associated protein-like 3 OS=Homo sapiens GN=GABARAPL3 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 50/112 (44.64%), Postives = 75/112 (66.96%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K+   F  R +E  +I  KYPDRVP+I E+  KA +PD++++K+LVP D++ GQF  ++  R+HL P  ALF FV +T+P T+  M  +YE   +ED FLY+ YS+E  +G
Sbjct:    5 YKEVHPFEYRKKEGEKIRKKYPDRVPLIVEKAPKARVPDLDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDDFLYVAYSNESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRAP_RAT (Gamma-aminobutyric acid receptor-associated protein OS=Rattus norvegicus GN=Gabarap PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K+E  F +R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRAP_RABIT (Gamma-aminobutyric acid receptor-associated protein OS=Oryctolagus cuniculus GN=GABARAP PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K+E  F +R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRAP_MOUSE (Gamma-aminobutyric acid receptor-associated protein OS=Mus musculus GN=Gabarap PE=1 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K+E  F +R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRAP_HUMAN (Gamma-aminobutyric acid receptor-associated protein OS=Homo sapiens GN=GABARAP PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K+E  F +R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
The following BLAST results are available for this feature:
BLAST of FC921002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GBRL1_HUMAN1.153e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_CAVPO1.153e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
GBRL1_BOVIN1.153e-2547.32Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8_DICDI1.506e-2546.28Autophagy-related protein 8 OS=Dictyostelium disco... [more]
LGG1_CAEEL1.275e-2446.09Protein lgg-1 OS=Caenorhabditis elegans GN=lgg-1 P... [more]
GBRL3_HUMAN6.328e-2444.64Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RAT6.328e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_RABIT6.328e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_MOUSE6.328e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]
GBRAP_HUMAN6.328e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32201H06EF RVDevelopN Citrus clementina cDNA clone C32201H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921002 ID=FC921002; Name=FC921002; organism=Citrus clementina; type=EST; length=682bp
GAGAGTTGACGGGTAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAGTT
GAGACGATACGGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACA
TTCGGGCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGA
TCGAGTCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATA
TGGAAAAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTT
ATTCACATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTT
TGTATTTGTGAAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAG
TCTATGAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGC
AGTGAGAAAACCTTTGGTTATGAAAGAATTCAGACTTGTTAATACTTGAA
CTTTGTTCATGGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGT
GAAATGATGTATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCT
TAGTTTATTCTGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGAT
ATAACTTGCGTGTGGATATAACTTATGATTCCATCAACCTGCTTTGACGT
TTCATATGCAAAAAAAAAAAAAAAAAAAAAAA
back to top