FC921002

Overview
NameFC921002
Unique NameFC921002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24
Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +K+E  F +R  E  +I  KYPDRVPVI E+  KA + D++KKK+LVP D++VGQF  ++  R+HL    ALF FV + +P T+  M  +Y+   +ED FLY+ YS E  +G
Sbjct:    5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22
Identity = 55/120 (45.83%), Postives = 80/120 (66.67%), Query Frame = 2
Query:   77 QSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPG-----KALFVFV-KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            +SFK E++  +R   S +I  +Y DR+P+I ER + +D+PD+ KKKFL P +M +  F  I+  R HL        KA+F+FV K+ LP ++ L+ S+Y++ KDEDGFLY+CYS E TFG
Sbjct:    6 KSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNF--IMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            M   ++FK   TF QR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19
Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            M   ++FK   TF QR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            M   ++FK   +F QR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19
Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 2
Query:   65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            M   ++FK   +F QR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES +DEDGFLYM Y+S++TFG
Sbjct:    1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 2
Query:   65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            M   ++FK   TF QR+E+ R I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + I I+  RL L   +A F+ V   ++   +T +  VYES KDEDGFLYM  +S++TFG
Sbjct:    1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 46/117 (39.32%), Postives = 77/117 (65.81%), Query Frame = 2
Query:   74 MQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKAD-LPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            ++ FK   +   R EE   I AK+P+++PV+ ERY +   LP ++K KFLVP+++++ QF+ I+ SR+ L   +A ++ V + +L   +  M  +Y  +KDEDGF+YM Y+S++TFG
Sbjct:   10 VRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
The following BLAST results are available for this feature:
BLAST of FC921002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
GBRAP_BOVIN6.328e-2445.54Gamma-aminobutyric acid receptor-associated protei... [more]
ATG8L_DICDI2.659e-2245.83Autophagy-related protein 8-like protein DDB_G0290... [more]
MLP3B_HUMAN9.457e-2043.33Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN2.107e-1943.33Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT6.130e-1941.67Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE6.130e-1941.67Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN1.046e-1842.50Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3C_HUMAN1.046e-1839.32Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN1.046e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT1.366e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]

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Properties
Property NameValue
Genbank descriptionC32201H06EF RVDevelopN Citrus clementina cDNA clone C32201H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921002 ID=FC921002; Name=FC921002; organism=Citrus clementina; type=EST; length=682bp
GAGAGTTGACGGGTAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAGTT
GAGACGATACGGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACA
TTCGGGCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGA
TCGAGTCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATA
TGGAAAAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTT
ATTCACATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTT
TGTATTTGTGAAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAG
TCTATGAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGC
AGTGAGAAAACCTTTGGTTATGAAAGAATTCAGACTTGTTAATACTTGAA
CTTTGTTCATGGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGT
GAAATGATGTATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCT
TAGTTTATTCTGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGAT
ATAACTTGCGTGTGGATATAACTTATGATTCCATCAACCTGCTTTGACGT
TTCATATGCAAAAAAAAAAAAAAAAAAAAAAA
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