FC921002
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: GBRAP_BOVIN (Gamma-aminobutyric acid receptor-associated protein OS=Bos taurus GN=GABARAP PE=3 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 6.328e-24 Identity = 51/112 (45.54%), Postives = 73/112 (65.18%), Query Frame = 2 Query: 83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 +K+E F +R E +I KYPDRVPVI E+ KA + D++KKK+LVP D++VGQF ++ R+HL ALF FV + +P T+ M +Y+ +ED FLY+ YS E +G Sbjct: 5 YKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG 116
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8L_DICDI (Autophagy-related protein 8-like protein DDB_G0290491 OS=Dictyostelium discoideum GN=DDB_G0290491 PE=3 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 2.659e-22 Identity = 55/120 (45.83%), Postives = 80/120 (66.67%), Query Frame = 2 Query: 77 QSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPG-----KALFVFV-KDTLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 +SFK E++ +R S +I +Y DR+P+I ER + +D+PD+ KKKFL P +M + F I+ R HL KA+F+FV K+ LP ++ L+ S+Y++ KDEDGFLY+CYS E TFG Sbjct: 6 KSFKQEYSLEKRKLISSKIRNRYKDRLPIIVERAANSDVPDINKKKFLAPSNMVITNF--IMEIRKHLDDSDHNEQKAIFLFVNKNNLPPSSQLLSSIYDAHKDEDGFLYICYSGENTFG 123
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3) HSP 1 Score: 97.0561 bits (240), Expect = 9.457e-20 Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 2 Query: 65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 M ++FK TF QR+E+ R I ++P ++PVI ERY + LP ++K KFLVP +++ + I I+ RL L +A F+ V ++ +T + VYES KDEDGFLYM Y+S++TFG Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4) HSP 1 Score: 95.9005 bits (237), Expect = 2.107e-19 Identity = 52/120 (43.33%), Postives = 77/120 (64.17%), Query Frame = 2 Query: 65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 M ++FK TF QR+E+ R I ++P ++PVI ERY + LP ++K KFLVP +++ + I I+ RL L +A F+ V ++ +T + VYES KDEDGFLYM Y+S++TFG Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19 Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 2 Query: 65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 M ++FK +F QR+E+ R I ++P ++PVI ERY + LP ++K KFLVP +++ + I I+ RL L +A F+ V ++ +T + VYES +DEDGFLYM Y+S++TFG Sbjct: 1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 6.130e-19 Identity = 50/120 (41.67%), Postives = 77/120 (64.17%), Query Frame = 2 Query: 65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 M ++FK +F QR+E+ R I ++P ++PVI ERY + LP ++K KFLVP +++ + I I+ RL L +A F+ V ++ +T + VYES +DEDGFLYM Y+S++TFG Sbjct: 1 MPSEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFG 120
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18 Identity = 51/120 (42.50%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 65 MGKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 M ++FK TF QR+E+ R I ++P ++PVI ERY + LP ++K KFLVP +++ + I I+ RL L +A F+ V ++ +T + VYES KDEDGFLYM +S++TFG Sbjct: 1 MPSEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18 Identity = 46/117 (39.32%), Postives = 77/117 (65.81%), Query Frame = 2 Query: 74 MQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERYSKAD-LPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 ++ FK + R EE I AK+P+++PV+ ERY + LP ++K KFLVP+++++ QF+ I+ SR+ L +A ++ V + +L + M +Y +KDEDGF+YM Y+S++TFG Sbjct: 10 VRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.046e-18 Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2 Query: 83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421 FK +F R +E ++I ++P ++PVI ERY + LP ++K KFLVP +++ + + I+ RL L P +A F+ V ++ +T + +YE KDEDGFLYM Y+S++TFG+ Sbjct: 7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18 Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2 Query: 83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421 FK +F R +E ++I ++P ++PVI ERY + LP ++K KFLVP +++ + + I+ RL L P +A F+ V ++ +T + +YE KDEDGFLYM Y+S++TFG+ Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121 The following BLAST results are available for this feature:
BLAST of FC921002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921002 ID=FC921002; Name=FC921002; organism=Citrus clementina; type=EST; length=682bpback to top |