FC921002

Overview
NameFC921002
Unique NameFC921002
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2
Query:   83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421
            FK   +F  R +E ++I  ++P ++PVI ERY  +  LP ++K KFLVP  +++ + + I+  RL L P +A F+ V   ++   +T +  +YE  KDEDGFLYM Y+S++TFG+
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8E_ORYSJ (Putative autophagy-related protein 8E OS=Oryza sativa subsp. japonica GN=ATG8E PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 2
Query:  170 ERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDE-DGFLYMCYSSEKTFG 418
            +++S+++LP+MEK+K                   LHL PG ALFVFV +TLPQTA LM SVYES+KDE DGFLY+CYSSEKTFG
Sbjct:   23 DKFSRSNLPEMEKRK-------------------LHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87          
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15
Identity = 44/119 (36.97%), Postives = 74/119 (62.18%), Query Frame = 2
Query:   68 GKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418
            G + SFK+   F +R ++  EI ++ P++VPVI ER+  +  LP M++ KFLVP  ++V + + I+  RL L P +A F+ V + ++   +  M ++Y   +D DGF+YM Y+S+  FG
Sbjct:   12 GIVPSFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130          
The following BLAST results are available for this feature:
BLAST of FC921002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
MLP3A_MOUSE1.366e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN1.366e-1840.00Microtubule-associated proteins 1A/1B light chain ... [more]
ATG8E_ORYSJ3.973e-1857.14Putative autophagy-related protein 8E OS=Oryza sat... [more]
LGG2_CAEEL1.082e-1536.97Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

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Properties
Property NameValue
Genbank descriptionC32201H06EF RVDevelopN Citrus clementina cDNA clone C32201H06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921002 ID=FC921002; Name=FC921002; organism=Citrus clementina; type=EST; length=682bp
GAGAGTTGACGGGTAGTTCAGCCGTTTGGGTTTCTCTTTCCTTGAGAGTT
GAGACGATACGGAGATGGGAAAGATGCAATCTTTCAAGGACGAGTTCACA
TTCGGGCAAAGACTTGAAGAATCGCGCGAAATCATTGCGAAATACCCCGA
TCGAGTCCCCGTAATTGCGGAAAGATATTCAAAAGCTGACCTTCCTGATA
TGGAAAAGAAAAAATTTCTGGTTCCTCGGGACATGTCTGTTGGGCAATTT
ATTCACATTTTAAGCAGCAGGCTTCACCTGACCCCTGGAAAAGCTCTCTT
TGTATTTGTGAAAGATACTTTACCGCAAACAGCGACTTTAATGGACTCAG
TCTATGAATCCTTCAAGGATGAGGATGGATTCCTGTATATGTGCTACAGC
AGTGAGAAAACCTTTGGTTATGAAAGAATTCAGACTTGTTAATACTTGAA
CTTTGTTCATGGCTGTGTGCTACTGTGCTTTACATGCCACTCCTTGTTGT
GAAATGATGTATATAACTCAGCATGGCCATTGATGTTGTATTATCTGTCT
TAGTTTATTCTGCAGATTGTTTAAACATCAGAAATGTCTCGTGTGTGGAT
ATAACTTGCGTGTGGATATAACTTATGATTCCATCAACCTGCTTTGACGT
TTCATATGCAAAAAAAAAAAAAAAAAAAAAAA
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