FC921002
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18 Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2 Query: 83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421 FK +F R +E ++I ++P ++PVI ERY + LP ++K KFLVP +++ + + I+ RL L P +A F+ V ++ +T + +YE KDEDGFLYM Y+S++TFG+ Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18 Identity = 46/115 (40.00%), Postives = 74/115 (64.35%), Query Frame = 2 Query: 83 FKDEFTFGQRLEESREIIAKYPDRVPVIAERYS-KADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFGY 421 FK +F R +E ++I ++P ++PVI ERY + LP ++K KFLVP +++ + + I+ RL L P +A F+ V ++ +T + +YE KDEDGFLYM Y+S++TFG+ Sbjct: 7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFGF 121
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: ATG8E_ORYSJ (Putative autophagy-related protein 8E OS=Oryza sativa subsp. japonica GN=ATG8E PE=3 SV=2) HSP 1 Score: 91.6633 bits (226), Expect = 3.973e-18 Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 2 Query: 170 ERYSKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKDTLPQTATLMDSVYESFKDE-DGFLYMCYSSEKTFG 418 +++S+++LP+MEK+K LHL PG ALFVFV +TLPQTA LM SVYES+KDE DGFLY+CYSSEKTFG Sbjct: 23 DKFSRSNLPEMEKRK-------------------LHLPPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 87
BLAST of FC921002 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.082e-15 Identity = 44/119 (36.97%), Postives = 74/119 (62.18%), Query Frame = 2 Query: 68 GKMQSFKDEFTFGQRLEESREIIAKYPDRVPVIAERY-SKADLPDMEKKKFLVPRDMSVGQFIHILSSRLHLTPGKALFVFVKD-TLPQTATLMDSVYESFKDEDGFLYMCYSSEKTFG 418 G + SFK+ F +R ++ EI ++ P++VPVI ER+ + LP M++ KFLVP ++V + + I+ RL L P +A F+ V + ++ + M ++Y +D DGF+YM Y+S+ FG Sbjct: 12 GIVPSFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERSLPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130 The following BLAST results are available for this feature:
BLAST of FC921002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 84
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Sequences
The
following sequences are available for this feature:
EST sequence >FC921002 ID=FC921002; Name=FC921002; organism=Citrus clementina; type=EST; length=682bpback to top |