FC921042

Overview
NameFC921042
Unique NameFC921042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length299
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_SPIOL (Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.274e-14
Identity = 34/37 (91.89%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GRAVVVHA+PDDLG+GGHELSKTTGNAGGRVAC
Sbjct:  109 NSIVGRAVVVHAEPDDLGRGGHELSKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_SOYBN (Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.274e-14
Identity = 36/37 (97.30%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGRAVVVHAD DDLGKGGHELSKTTGNAGGRVAC
Sbjct:  109 NSIIGRAVVVHADSDDLGKGGHELSKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_PAUKA (Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.582e-14
Identity = 35/37 (94.59%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGRAVVVHADPDDLGKGGHELSKTTGN GGRVAC
Sbjct:  109 HSIIGRAVVVHADPDDLGKGGHELSKTTGNTGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_IPOBA (Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.582e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NS+IGRAVVVH DPDDLGKGGHELSK+TGNAGGRVAC
Sbjct:  109 NSVIGRAVVVHGDPDDLGKGGHELSKSTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC2_MAIZE (Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 5.582e-14
Identity = 35/37 (94.59%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGRVAC
Sbjct:  108 HSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRVAC 144          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC1_MESCR (Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.582e-14
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GRAVVVHADPDDLG+GGHELSK TGNAGGRVAC
Sbjct:  109 NSIVGRAVVVHADPDDLGRGGHELSKATGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC2_SOLLC (Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopersicum GN=SODCC.5 PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 9.522e-14
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 3
Query:    9 SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+AC
Sbjct:  110 SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC1_SOLLC (Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopersicum GN=SODCC.1 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 9.522e-14
Identity = 34/36 (94.44%), Postives = 36/36 (100.00%), Query Frame = 3
Query:    9 SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+AC
Sbjct:  110 SIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_PANGI (Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.244e-13
Identity = 34/38 (89.47%), Postives = 37/38 (97.37%), Query Frame = 3
Query:    3 TNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            + SIIGRAVVVHADPDDLGKGGHELSK+TGNAGGR+AC
Sbjct:  108 SGSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRLAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC1_BRAJU (Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea GN=SODCC1 PE=2 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 1.244e-13
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GRAVVVHA+PDDLGKGGHELS TTGNAGGRVAC
Sbjct:  109 NSIVGRAVVVHAEPDDLGKGGHELSLTTGNAGGRVAC 145          
The following BLAST results are available for this feature:
BLAST of FC921042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
SODC_SPIOL4.274e-1491.89Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea ... [more]
SODC_SOYBN4.274e-1497.30Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD... [more]
SODC_PAUKA5.582e-1494.59Superoxide dismutase [Cu-Zn] OS=Paulownia kawakami... [more]
SODC_IPOBA5.582e-1491.89Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN... [more]
SODC2_MAIZE5.582e-1494.59Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODC... [more]
SODC1_MESCR5.582e-1491.89Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum... [more]
SODC2_SOLLC9.522e-1494.44Superoxide dismutase [Cu-Zn] 2 OS=Solanum lycopers... [more]
SODC1_SOLLC9.522e-1494.44Superoxide dismutase [Cu-Zn] 1 OS=Solanum lycopers... [more]
SODC_PANGI1.244e-1389.47Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=S... [more]
SODC1_BRAJU1.244e-1391.89Superoxide dismutase [Cu-Zn] 1 OS=Brassica juncea ... [more]

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Properties
Property NameValue
Genbank descriptionC32202D06EF RVDevelopN Citrus clementina cDNA clone C32202D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921042 ID=FC921042; Name=FC921042; organism=Citrus clementina; type=EST; length=299bp
GAACAAATTCTATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGAT
GATCTTGGCAAGGGTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGG
TGGCAGAGTAGCTTGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCT
CTTTGGACCATAATAAATTCATTTGATATGATGTGTTGAATGCATTCTGG
TCCATACATGCTTGAGTGTGACTTTTTGAGACTATGATCTTGAATAAGAG
AAATCTAAAACTTTGTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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