FC921042

Overview
NameFC921042
Unique NameFC921042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length299
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_ZANAE (Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NS++GRAVVVHAD DDLGKGGHELSKTTGNAGGR+AC
Sbjct:  109 NSVVGRAVVVHADSDDLGKGGHELSKTTGNAGGRLAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_PINSY (Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 33/37 (89.19%), Postives = 37/37 (100.00%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SI+GRAVVVHADPDDLGKGGHELSK+TGNAGGR+AC
Sbjct:  111 HSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRLAC 147          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_CAPAN (Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN=SODCC PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 34/36 (94.44%), Postives = 35/36 (97.22%), Query Frame = 3
Query:    9 SIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            SIIGR VVVHADPDDLGKGGHEL+KTTGNAGGRVAC
Sbjct:  110 SIIGRGVVVHADPDDLGKGGHELTKTTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_BRAOC (Superoxide dismutase [Cu-Zn] OS=Brassica oleracea var. capitata GN=SODCC PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 33/37 (89.19%), Postives = 36/37 (97.30%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GRA+VVHADPDDLGKGGHELS +TGNAGGRVAC
Sbjct:  109 NSIVGRAIVVHADPDDLGKGGHELSLSTGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_ARATH (Superoxide dismutase [Cu-Zn] OS=Arabidopsis thaliana GN=SODCC PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.624e-13
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GRAVVVHADPDDLGKGGHELS  TGNAGGRVAC
Sbjct:  109 NSIVGRAVVVHADPDDLGKGGHELSLATGNAGGRVAC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROWI (Superoxide dismutase [Cu-Zn] OS=Drosophila willistoni GN=Sod PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.770e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ C
Sbjct:  109 NSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROVI (Superoxide dismutase [Cu-Zn] OS=Drosophila virilis GN=Sod PE=3 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.770e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ C
Sbjct:  109 NSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROBS (Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosophila busckii GN=Sod PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.770e-13
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGR VVVHADPDDLGKGGHELSKTTGNAG R+ C
Sbjct:  101 NSIIGRTVVVHADPDDLGKGGHELSKTTGNAGARIGC 137          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_BOMMO (Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 2.770e-13
Identity = 33/37 (89.19%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSIIGR +VVHADPDDLG GGHELSKTTGNAGGR+AC
Sbjct:  110 NSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGRIAC 146          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC2_BRAJU (Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea GN=SODCC2 PE=2 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.725e-13
Identity = 34/37 (91.89%), Postives = 35/37 (94.59%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GRAVVVHADPD LGKGGHELS TTGNAGGRVAC
Sbjct:  109 NSIVGRAVVVHADPDVLGKGGHELSLTTGNAGGRVAC 145          
The following BLAST results are available for this feature:
BLAST of FC921042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
SODC_ZANAE1.624e-1389.19Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethi... [more]
SODC_PINSY1.624e-1389.19Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris G... [more]
SODC_CAPAN1.624e-1394.44Superoxide dismutase [Cu-Zn] OS=Capsicum annuum GN... [more]
SODC_BRAOC1.624e-1389.19Superoxide dismutase [Cu-Zn] OS=Brassica oleracea ... [more]
SODC_ARATH1.624e-1391.89Superoxide dismutase [Cu-Zn] OS=Arabidopsis thalia... [more]
SODC_DROWI2.770e-1389.19Superoxide dismutase [Cu-Zn] OS=Drosophila willist... [more]
SODC_DROVI2.770e-1389.19Superoxide dismutase [Cu-Zn] OS=Drosophila virilis... [more]
SODC_DROBS2.770e-1389.19Superoxide dismutase [Cu-Zn] (Fragment) OS=Drosoph... [more]
SODC_BOMMO2.770e-1389.19Superoxide dismutase [Cu-Zn] OS=Bombyx mori PE=1 S... [more]
SODC2_BRAJU4.725e-1391.89Superoxide dismutase [Cu-Zn] 2 OS=Brassica juncea ... [more]

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Properties
Property NameValue
Genbank descriptionC32202D06EF RVDevelopN Citrus clementina cDNA clone C32202D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921042 ID=FC921042; Name=FC921042; organism=Citrus clementina; type=EST; length=299bp
GAACAAATTCTATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGAT
GATCTTGGCAAGGGTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGG
TGGCAGAGTAGCTTGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCT
CTTTGGACCATAATAAATTCATTTGATATGATGTGTTGAATGCATTCTGG
TCCATACATGCTTGAGTGTGACTTTTTGAGACTATGATCTTGAATAAGAG
AAATCTAAAACTTTGTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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