FC921042

Overview
NameFC921042
Unique NameFC921042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length299
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_CERCA (Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata GN=Sod PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 8.060e-13
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GR +VVHADPDDLGKGGHELSKTTGNAG R+ C
Sbjct:  109 NSIVGRTIVVHADPDDLGKGGHELSKTTGNAGARLGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_CHYAM (Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena GN=Sod PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.053e-12
Identity = 31/37 (83.78%), Postives = 34/37 (91.89%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NSI+GR VVVHADPDDLGKGGHELSK+TGNAG R+ C
Sbjct:  109 NSIVGRTVVVHADPDDLGKGGHELSKSTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROPS (Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoobscura pseudoobscura GN=Sod PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 8.912e-12
Identity = 31/37 (83.78%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLGKGGHELSKTTGNAG R+ C
Sbjct:  108 DSIIGRTVVVHADADDLGKGGHELSKTTGNAGARIGC 144          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROYA (Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba GN=Sod PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ C
Sbjct:  109 DSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROOR (Superoxide dismutase [Cu-Zn] OS=Drosophila orena GN=Sod PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ C
Sbjct:  109 DSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROER (Superoxide dismutase [Cu-Zn] OS=Drosophila erecta GN=Sod PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLGKGGHELSK+TGNAG R+ C
Sbjct:  109 DSIIGRTVVVHADADDLGKGGHELSKSTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROTE (Superoxide dismutase [Cu-Zn] OS=Drosophila teissieri GN=Sod PE=3 SV=3)

HSP 1 Score: 65.855 bits (159), Expect = 7.544e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ C
Sbjct:  109 DSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROSI (Superoxide dismutase [Cu-Zn] OS=Drosophila simulans GN=Sod PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.544e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ C
Sbjct:  109 DSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROSE (Superoxide dismutase [Cu-Zn] OS=Drosophila sechellia GN=Sod PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.544e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ C
Sbjct:  109 DSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROME (Superoxide dismutase [Cu-Zn] OS=Drosophila melanogaster GN=Sod PE=1 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.544e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ C
Sbjct:  109 DSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGC 145          
The following BLAST results are available for this feature:
BLAST of FC921042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
SODC_CERCA8.060e-1383.78Superoxide dismutase [Cu-Zn] OS=Ceratitis capitata... [more]
SODC_CHYAM1.053e-1283.78Superoxide dismutase [Cu-Zn] OS=Chymomyza amoena G... [more]
SODC_DROPS8.912e-1283.78Superoxide dismutase [Cu-Zn] OS=Drosophila pseudoo... [more]
SODC_DROYA2.593e-1181.08Superoxide dismutase [Cu-Zn] OS=Drosophila yakuba ... [more]
SODC_DROOR2.593e-1181.08Superoxide dismutase [Cu-Zn] OS=Drosophila orena G... [more]
SODC_DROER2.593e-1181.08Superoxide dismutase [Cu-Zn] OS=Drosophila erecta ... [more]
SODC_DROTE7.544e-1178.38Superoxide dismutase [Cu-Zn] OS=Drosophila teissie... [more]
SODC_DROSI7.544e-1178.38Superoxide dismutase [Cu-Zn] OS=Drosophila simulan... [more]
SODC_DROSE7.544e-1178.38Superoxide dismutase [Cu-Zn] OS=Drosophila sechell... [more]
SODC_DROME7.544e-1178.38Superoxide dismutase [Cu-Zn] OS=Drosophila melanog... [more]

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Properties
Property NameValue
Genbank descriptionC32202D06EF RVDevelopN Citrus clementina cDNA clone C32202D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921042 ID=FC921042; Name=FC921042; organism=Citrus clementina; type=EST; length=299bp
GAACAAATTCTATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGAT
GATCTTGGCAAGGGTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGG
TGGCAGAGTAGCTTGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCT
CTTTGGACCATAATAAATTCATTTGATATGATGTGTTGAATGCATTCTGG
TCCATACATGCTTGAGTGTGACTTTTTGAGACTATGATCTTGAATAAGAG
AAATCTAAAACTTTGTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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