FC921042

Overview
NameFC921042
Unique NameFC921042
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length299
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC_DROMA (Superoxide dismutase [Cu-Zn] OS=Drosophila mauritiana GN=Sod PE=3 SV=2)

HSP 1 Score: 65.855 bits (159), Expect = 7.544e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SIIGR VVVHAD DDLG+GGHELSK+TGNAG R+ C
Sbjct:  109 DSIIGRTVVVHADADDLGQGGHELSKSTGNAGARIGC 145          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODCP_SPIOL (Superoxide dismutase [Cu-Zn], chloroplastic OS=Spinacia oleracea GN=SODCP PE=1 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            NS++GRA+VVH   DDLGKGGHELS TTGNAGGR+AC
Sbjct:  178 NSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLAC 214          
BLAST of FC921042 vs. ExPASy Swiss-Prot
Match: SODC2_MESCR (Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 30/37 (81.08%), Postives = 33/37 (89.19%), Query Frame = 3
Query:    6 NSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVAC 116
            +SI+GRAVVVHAD DDLG+ GHELSKTTGNAG RV C
Sbjct:  111 HSILGRAVVVHADQDDLGRTGHELSKTTGNAGARVRC 147          
The following BLAST results are available for this feature:
BLAST of FC921042 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
SODC_DROMA7.544e-1178.38Superoxide dismutase [Cu-Zn] OS=Drosophila mauriti... [more]
SODCP_SPIOL9.853e-1178.38Superoxide dismutase [Cu-Zn], chloroplastic OS=Spi... [more]
SODC2_MESCR9.853e-1181.08Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum... [more]

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Properties
Property NameValue
Genbank descriptionC32202D06EF RVDevelopN Citrus clementina cDNA clone C32202D06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921042 ID=FC921042; Name=FC921042; organism=Citrus clementina; type=EST; length=299bp
GAACAAATTCTATTATTGGAAGGGCTGTTGTAGTCCACGCAGATCCCGAT
GATCTTGGCAAGGGTGGACATGAGCTCAGCAAAACCACTGGAAATGCTGG
TGGCAGAGTAGCTTGCGGCATCATTGGCATCCAAGGATGAAGCGGCTTCT
CTTTGGACCATAATAAATTCATTTGATATGATGTGTTGAATGCATTCTGG
TCCATACATGCTTGAGTGTGACTTTTTGAGACTATGATCTTGAATAAGAG
AAATCTAAAACTTTGTTGTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
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