FC921048

Overview
NameFC921048
Unique NameFC921048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_AVESA (V-type proton ATPase 16 kDa proteolipid subunit OS=Avena sativa GN=VATP-P1 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.196e-55
Identity = 119/165 (72.12%), Postives = 121/165 (73.33%), Query Frame = 3
Query:   30 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 524
            MSS FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAK Y+LFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:    1 MSSVFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_PHAAU (V-type proton ATPase 16 kDa proteolipid subunit OS=Phaseolus aureus PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.040e-55
Identity = 118/163 (72.39%), Postives = 121/163 (74.23%), Query Frame = 3
Query:   36 STFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 524
            ++FSGDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:    2 ASFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 164          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_SOLLC (V-type proton ATPase 16 kDa proteolipid subunit OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 3.479e-55
Identity = 118/163 (72.39%), Postives = 119/163 (73.01%), Query Frame = 3
Query:   36 STFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 524
            S F+GDETAP             SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPK KSYYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRAE
Sbjct:    2 SNFAGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKTKSYYLFDGYAHLSSGLACGLAGLSAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAE 164          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_MAIZE (V-type proton ATPase 16 kDa proteolipid subunit (Fragment) OS=Zea mays PE=2 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 2.866e-33
Identity = 78/109 (71.56%), Postives = 79/109 (72.48%), Query Frame = 3
Query:  198 VPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAE 524
            VPVVMAGVLGIYGLIIAVIISTGINPKAK YYLFDGY                 MAIGIVGDAGVRANAQQPKLFVGM            YGLIVGIILSSRAGQSRA+
Sbjct:    1 VPVVMAGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 109          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_PLECA (V-type proton ATPase 16 kDa proteolipid subunit OS=Pleurochrysis carterae GN=VAP PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.169e-32
Identity = 81/152 (53.29%), Postives = 96/152 (63.16%), Query Frame = 3
Query:   57 TAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGI-NPKA--KSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            TAP             + +GAAYGTAKSGVGV+SMGVM+P+LVMKSI+PVVMAGVLGIYGLIIAVII  G+  P+     Y  F G+                 +AIGIVGDAGVRA+AQQ KL+VGM            YGLIVG+IL+S+
Sbjct:    8 TAPFFGFMGAAVALIFANLGAAYGTAKSGVGVSSMGVMKPDLVMKSIIPVVMAGVLGIYGLIIAVIIGNGVKGPEGGKPQYSSFTGFAHLAAGLACGLSGMAAGIAIGIVGDAGVRASAQQAKLYVGMVLILIFAEALGLYGLIVGLILTSK 159          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_HELVI (V-type proton ATPase 16 kDa proteolipid subunit OS=Heliothis virescens GN=VHA16 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.739e-30
Identity = 67/133 (50.38%), Postives = 87/133 (65.41%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit OS=Neurospora crassa GN=vma-3 PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 65/134 (48.51%), Postives = 91/134 (67.91%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 506
            +C+GA+YGTAKSGVG+A+MGV+RP+L++K+IVPV+MAG++GIYGL+++V+IS  +      Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV ++++S+A
Sbjct:   24 TCLGASYGTAKSGVGIAAMGVLRPDLIVKNIVPVIMAGIIGIYGLVVSVLISDALT--QDHYALYTGFIQLGAGLAVGLAGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALLMNSKA 155          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_MANSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Manduca sexta GN=VHA16 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.271e-30
Identity = 67/133 (50.38%), Postives = 87/133 (65.41%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++  + +Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   23 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 155          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_SHEEP (V-type proton ATPase 16 kDa proteolipid subunit OS=Ovis aries GN=ATP6V0C PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.472e-29
Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   30 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            MS   SG E A              S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:    1 MSEAKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_HUMAN (V-type proton ATPase 16 kDa proteolipid subunit OS=Homo sapiens GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 72/158 (45.57%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   30 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            MS + SG E A              S +GAAYGTAKSG G+A+M VMRPE +MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:    1 MSESKSGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVLIANSLNDDIS---LYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
The following BLAST results are available for this feature:
BLAST of FC921048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_AVESA1.196e-5572.12V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_PHAAU2.040e-5572.39V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SOLLC3.479e-5572.39V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MAIZE2.866e-3371.56V-type proton ATPase 16 kDa proteolipid subunit (F... [more]
VATL_PLECA3.169e-3253.29V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HELVI1.739e-3050.38V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_NEUCR2.271e-3048.51V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MANSE2.271e-3050.38V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_SHEEP1.472e-2945.57V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_HUMAN1.922e-2945.57V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionC32202E03EF RVDevelopN Citrus clementina cDNA clone C32202E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921048 ID=FC921048; Name=FC921048; organism=Citrus clementina; type=EST; length=729bp
GGTAGCAAACAGGCAAAATCATCATCGCCATGTCATCGACTTTCTCCGGC
GACGAAACTGCTCCCTTCTTCGGCTTCCTTGGAGCAGCGGCCGCTCTCGT
CTTCTCCTGTATGGGTGCTGCCTATGGGACAGCAAAGAGTGGGGTTGGAG
TGGCTTCAATGGGTGTCATGAGGCCGGAGCTTGTTATGAAATCGATTGTT
CCAGTGGTTATGGCTGGAGTTTTGGGTATTTATGGGTTGATTATTGCTGT
TATTATTAGTACTGGGATCAACCCTAAAGCTAAGTCTTATTATTTGTTTG
ATGGGTATGCACATTTGTCTTCGGGGCTTGCTTGTGGTCTTGCTGGACTC
TCTGCTGGGATGGCTATTGGAATTGTTGGTGATGCGGGAGTTAGGGCTAA
CGCACAGCAGCCTAAGTTGTTTGTGGGAATGATTCTTATTCTCATCTTTG
CCGAAGCTCTCGCTCTTTATGGTCTCATCGTGGGAATCATCCTCTCATCT
CGAGCAGGCCAATCTCGGGCAGAATAAAAGAAAAGGTCAAAACAGTTATC
TTGTAACGTTTATCCAGTCTGATTAAAATTGAAGCTGTATGAGTTGATTT
TTTTTGGATTTGTTTAGTTTAGTTGATAAACTCGTGTACATGATGGATTC
CCTTTAGTATTATGGAATTATACTCTGTTGTCACAGGCTTGGTTTTCCTT
TGGATAGTGAAGCAGATATACATTTCAAT
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