FC921048

Overview
NameFC921048
Unique NameFC921048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_DROME (V-type proton ATPase 16 kDa proteolipid subunit OS=Drosophila melanogaster GN=Vha16 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 74/160 (46.25%), Postives = 92/160 (57.50%), Query Frame = 3
Query:   30 MSSTFSGDET--APXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            MSS  S D     P             S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  +   +K Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:    1 MSSEVSSDNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALEEPSK-YSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 159          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_AEDAE (V-type proton ATPase 16 kDa proteolipid subunit OS=Aedes aegypti GN=AAEL000291 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.922e-29
Identity = 68/133 (51.13%), Postives = 86/133 (64.66%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+  ++   K Y L+ G+                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV I L ++
Sbjct:   26 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIAGSLDTPTK-YSLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVAIYLYTK 157          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_BOVIN (V-type proton ATPase 16 kDa proteolipid subunit OS=Bos taurus GN=ATP6V0C PE=1 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.279e-29
Identity = 71/158 (44.94%), Postives = 91/158 (57.59%), Query Frame = 3
Query:   30 MSSTFSGDETAPXXXXXXXXXXXXXSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            MS   +G E A              S +GAAYGTAKSG G+A+M VMRPE++MKSI+PVVMAG++ IYGL++AV+I+  +N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:    1 MSEAKNGPEYASFFAVMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVLIANSLN---DGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_ASCSU (V-type proton ATPase 16 kDa proteolipid subunit OS=Ascaris suum GN=12 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.283e-29
Identity = 63/130 (48.46%), Postives = 84/130 (64.62%), Query Frame = 3
Query:  111 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 500
            +GAAYGTAKS VG++SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   31 LGAAYGTAKSAVGISSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLRGKVTSASAGYTLDKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_TORMA (V-type proton ATPase 16 kDa proteolipid subunit OS=Torpedo marmorata PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 68/133 (51.13%), Postives = 85/133 (63.91%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            S +GAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N   +   LF  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   25 SALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 154          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL2_CAEEL (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis elegans GN=vha-2 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 3
Query:  111 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 500
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL2_CAEBR (V-type proton ATPase 16 kDa proteolipid subunit 2/3 OS=Caenorhabditis briggsae GN=vha-2 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.594e-29
Identity = 63/130 (48.46%), Postives = 83/130 (63.85%), Query Frame = 3
Query:  111 MGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSS 500
            +GAAYGTAKS VG+ SMGVMRPEL+MKS++PV+MAG++GIYGL++A+++   +   +  Y L  G+                  AIGIVGDAGVR  AQQP+LFVGM            YG+IV +IL +
Sbjct:   31 LGAAYGTAKSAVGICSMGVMRPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVQAASAGYDLNKGFAHLAAGLTCGLCGLGAGYAIGIVGDAGVRGTAQQPRLFVGMILILIFSEVLGLYGMIVALILGT 160          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_NEPNO (V-type proton ATPase 16 kDa proteolipid subunit OS=Nephrops norvegicus PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.305e-29
Identity = 67/133 (50.38%), Postives = 87/133 (65.41%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            S +GAAYGTAKSGVG+++M VMRPEL+MK I+PVVMAG++ IYGL++AV+I+ G   +A +Y L+ G+                  AIGIVGDAGVR  AQQP+L+VGM            YGLIV I L ++
Sbjct:   25 SALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAVLIA-GKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMILILIFAEVLGLYGLIVAIFLYTK 156          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_RAT (V-type proton ATPase 16 kDa proteolipid subunit OS=Rattus norvegicus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_MOUSE (V-type proton ATPase 16 kDa proteolipid subunit OS=Mus musculus GN=Atp6v0c PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.246e-28
Identity = 68/133 (51.13%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            S MGAAYGTAKSG G+A+M VMRPEL+MKSI+PVVMAG++ IYGL++AV+I+   N       L+  +                  AIGIVGDAGVR  AQQP+LFVGM            YGLIV +ILS++
Sbjct:   26 SAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAVLIA---NSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILILIFAEVLGLYGLIVALILSTK 155          
The following BLAST results are available for this feature:
BLAST of FC921048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL_DROME1.922e-2946.25V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_AEDAE1.922e-2951.13V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_BOVIN3.279e-2944.94V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ASCSU4.283e-2948.46V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_TORMA5.594e-2951.13V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL2_CAEEL5.594e-2948.46V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL2_CAEBR5.594e-2948.46V-type proton ATPase 16 kDa proteolipid subunit 2/... [more]
VATL_NEPNO7.305e-2950.38V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_RAT1.246e-2851.13V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_MOUSE1.246e-2851.13V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

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Properties
Property NameValue
Genbank descriptionC32202E03EF RVDevelopN Citrus clementina cDNA clone C32202E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921048 ID=FC921048; Name=FC921048; organism=Citrus clementina; type=EST; length=729bp
GGTAGCAAACAGGCAAAATCATCATCGCCATGTCATCGACTTTCTCCGGC
GACGAAACTGCTCCCTTCTTCGGCTTCCTTGGAGCAGCGGCCGCTCTCGT
CTTCTCCTGTATGGGTGCTGCCTATGGGACAGCAAAGAGTGGGGTTGGAG
TGGCTTCAATGGGTGTCATGAGGCCGGAGCTTGTTATGAAATCGATTGTT
CCAGTGGTTATGGCTGGAGTTTTGGGTATTTATGGGTTGATTATTGCTGT
TATTATTAGTACTGGGATCAACCCTAAAGCTAAGTCTTATTATTTGTTTG
ATGGGTATGCACATTTGTCTTCGGGGCTTGCTTGTGGTCTTGCTGGACTC
TCTGCTGGGATGGCTATTGGAATTGTTGGTGATGCGGGAGTTAGGGCTAA
CGCACAGCAGCCTAAGTTGTTTGTGGGAATGATTCTTATTCTCATCTTTG
CCGAAGCTCTCGCTCTTTATGGTCTCATCGTGGGAATCATCCTCTCATCT
CGAGCAGGCCAATCTCGGGCAGAATAAAAGAAAAGGTCAAAACAGTTATC
TTGTAACGTTTATCCAGTCTGATTAAAATTGAAGCTGTATGAGTTGATTT
TTTTTGGATTTGTTTAGTTTAGTTGATAAACTCGTGTACATGATGGATTC
CCTTTAGTATTATGGAATTATACTCTGTTGTCACAGGCTTGGTTTTCCTT
TGGATAGTGAAGCAGATATACATTTCAAT
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