FC921048

Overview
NameFC921048
Unique NameFC921048
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL2_SCHPO (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Schizosaccharomyces pombe GN=vma11 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.862e-24
Identity = 55/133 (41.35%), Postives = 84/133 (63.16%), Query Frame = 3
Query:  105 SCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSR 503
            SC+GA YGTA +G G+A++G  RPE+VMKS++PVVM+G++G+YGL+++V+I+  ++P    Y LF G+                  AIG+VGD GV++  +Q ++FV M            YGLIVG+IL ++
Sbjct:   25 SCLGAGYGTALAGRGIAAVGAFRPEIVMKSLIPVVMSGIIGVYGLVMSVLIAGDMSPD-NDYSLFSGFIHLSAGLAVGLTGVAAGYAIGVVGDRGVQSFMRQDRIFVSMVLILIFAEVLGLYGLIVGLILQTK 156          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL2_NEUCR (V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Neurospora crassa GN=vma-11 PE=2 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 54/133 (40.60%), Postives = 81/133 (60.90%), Query Frame = 3
Query:  114 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINP--KAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRA 506
            GAAYGTAKSG+G+A +G  RP+L+MK ++PVVM+G++ +Y L++AV+I+  + P    + Y LF+G+                   IGIVGD GVR+   Q ++FVGM            YGLIV +IL++++
Sbjct:   33 GAAYGTAKSGIGIAGVGTFRPDLIMKCLIPVVMSGIIAVYALVVAVLIAQDLGPPGSGQHYSLFNGFMHLACGLSVGLTGLAAGYCIGIVGDKGVRSFMLQSRIFVGMVLILIFGEVLGLYGLIVALILNTKS 165          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_ENTHI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba histolytica GN=VMA3 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 58/134 (43.28%), Postives = 77/134 (57.46%), Query Frame = 3
Query:  114 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQS 515
            G AYGTAKS VG++S+GVM+PE +++S+ PVV AG++G+YGLI+ +++   IN     Y L   +                 MAIGI GD GVR  AQQPKLFVGM            YG IV +I++S    S
Sbjct:   36 GGAYGTAKSSVGISSVGVMKPEFIVRSVAPVVFAGIIGLYGLIVCILLF--INVTKSEYSLNRAFLDLGAGLTCGLCGLASGMAIGISGDCGVRGAAQQPKLFVGMLICLIFSEALALYGFIVALIMASTGENS 167          
BLAST of FC921048 vs. ExPASy Swiss-Prot
Match: VATL_ENTDI (V-type proton ATPase 16 kDa proteolipid subunit OS=Entamoeba dispar GN=VMA3 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.022e-22
Identity = 57/134 (42.54%), Postives = 76/134 (56.72%), Query Frame = 3
Query:  114 GAAYGTAKSGVGVASMGVMRPELVMKSIVPVVMAGVLGIYGLIIAVIISTGINPKAKSYYLFDGYXXXXXXXXXXXXXXXXXMAIGIVGDAGVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQS 515
            G AYGTAKS VG++S+GVM+PE +M+S+ PVV AGV+G+YGLI+ +++   IN     Y L   +                 M+IGI GD GVR  AQQPKLFV M            YG IV +I+++    S
Sbjct:   34 GGAYGTAKSSVGISSVGVMKPEFIMRSLFPVVFAGVIGLYGLIVCIVLF--INVNKSEYSLNRAFLDLGAGLTCGLCGLASGMSIGISGDCGVRGAAQQPKLFVSMLICLIFSEALALYGFIVALIMAATGDNS 165          
The following BLAST results are available for this feature:
BLAST of FC921048 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
VATL2_SCHPO1.862e-2441.35V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL2_NEUCR1.576e-2340.60V-type proton ATPase 16 kDa proteolipid subunit 2 ... [more]
VATL_ENTHI2.059e-2343.28V-type proton ATPase 16 kDa proteolipid subunit OS... [more]
VATL_ENTDI1.022e-2242.54V-type proton ATPase 16 kDa proteolipid subunit OS... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32202E03EF RVDevelopN Citrus clementina cDNA clone C32202E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921048 ID=FC921048; Name=FC921048; organism=Citrus clementina; type=EST; length=729bp
GGTAGCAAACAGGCAAAATCATCATCGCCATGTCATCGACTTTCTCCGGC
GACGAAACTGCTCCCTTCTTCGGCTTCCTTGGAGCAGCGGCCGCTCTCGT
CTTCTCCTGTATGGGTGCTGCCTATGGGACAGCAAAGAGTGGGGTTGGAG
TGGCTTCAATGGGTGTCATGAGGCCGGAGCTTGTTATGAAATCGATTGTT
CCAGTGGTTATGGCTGGAGTTTTGGGTATTTATGGGTTGATTATTGCTGT
TATTATTAGTACTGGGATCAACCCTAAAGCTAAGTCTTATTATTTGTTTG
ATGGGTATGCACATTTGTCTTCGGGGCTTGCTTGTGGTCTTGCTGGACTC
TCTGCTGGGATGGCTATTGGAATTGTTGGTGATGCGGGAGTTAGGGCTAA
CGCACAGCAGCCTAAGTTGTTTGTGGGAATGATTCTTATTCTCATCTTTG
CCGAAGCTCTCGCTCTTTATGGTCTCATCGTGGGAATCATCCTCTCATCT
CGAGCAGGCCAATCTCGGGCAGAATAAAAGAAAAGGTCAAAACAGTTATC
TTGTAACGTTTATCCAGTCTGATTAAAATTGAAGCTGTATGAGTTGATTT
TTTTTGGATTTGTTTAGTTTAGTTGATAAACTCGTGTACATGATGGATTC
CCTTTAGTATTATGGAATTATACTCTGTTGTCACAGGCTTGGTTTTCCTT
TGGATAGTGAAGCAGATATACATTTCAAT
back to top