FC921088

Overview
NameFC921088
Unique NameFC921088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_RAT (NADP-dependent malic enzyme OS=Rattus norvegicus GN=Me1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 6.681e-20
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            VL  WPE  ++ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P  CLPIT
Sbjct:  136 VLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPIT 192          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_MOUSE (NADP-dependent malic enzyme OS=Mus musculus GN=Me1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.681e-20
Identity = 44/57 (77.19%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            VL  WPE  ++ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P  CLPIT
Sbjct:  136 VLNAWPEDVVKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQQCLPIT 192          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_COLLI (NADP-dependent malic enzyme OS=Columba livia GN=ME1 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.488e-19
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            +L++WPE  I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P  CLP+
Sbjct:  125 MLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPV 180          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAON_MOUSE (NADP-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me3 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.944e-19
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            +L +WPE +I+ +VVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P  CLP+
Sbjct:  171 MLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPV 226          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAON_HUMAN (NADP-dependent malic enzyme, mitochondrial OS=Homo sapiens GN=ME3 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.944e-19
Identity = 41/56 (73.21%), Postives = 48/56 (85.71%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            +L +WPE +I+ +VVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P  CLP+
Sbjct:  171 MLNSWPEDNIKAVVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVNPQQCLPV 226          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_PIG (NADP-dependent malic enzyme (Fragment) OS=Sus scrofa GN=ME1 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.316e-19
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            VL  WPE  I+ +VVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P  CLP+
Sbjct:  122 VLNAWPEDVIKAVVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGVNPQECLPV 177          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOX_HUMAN (NADP-dependent malic enzyme OS=Homo sapiens GN=ME1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.331e-19
Identity = 43/56 (76.79%), Postives = 46/56 (82.14%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            VL  WPE  I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG+ P  CLP+
Sbjct:  136 VLNAWPEDVIKAIVVTDGERILGLGDLGCNGMGIPVGKLALYTACGGMNPQECLPV 191          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOM_HUMAN (NAD-dependent malic enzyme, mitochondrial OS=Homo sapiens GN=ME2 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.788e-18
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++ NWPE  ++ +VVTDGERILGLGDLG  GMGIPVGKL LYTA  GIRP  CLP+
Sbjct:  146 IVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPV 201          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOM_ASCSU (NAD-dependent malic enzyme, mitochondrial (Fragment) OS=Ascaris suum PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.253e-18
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L NW E  ++ IVVTDGERILGLGDLG  G+GIPVGKLALY ALGG++P  CLP+
Sbjct:  199 QILSNWHEEDVRAIVVTDGERILGLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPV 255          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAOM_MOUSE (NAD-dependent malic enzyme, mitochondrial OS=Mus musculus GN=Me2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.393e-17
Identity = 38/56 (67.86%), Postives = 45/56 (80.36%), Query Frame = 3
Query:    9 VLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++ NWPE  ++ +VVTDGERILGLGDLG  GMGIPVGKL LYTA  GI+P  CLP+
Sbjct:  146 IVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIQPEKCLPV 201          
The following BLAST results are available for this feature:
BLAST of FC921088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
MAOX_RAT6.681e-2077.19NADP-dependent malic enzyme OS=Rattus norvegicus G... [more]
MAOX_MOUSE6.681e-2077.19NADP-dependent malic enzyme OS=Mus musculus GN=Me1... [more]
MAOX_COLLI1.488e-1975.00NADP-dependent malic enzyme OS=Columba livia GN=ME... [more]
MAON_MOUSE1.944e-1973.21NADP-dependent malic enzyme, mitochondrial OS=Mus ... [more]
MAON_HUMAN1.944e-1973.21NADP-dependent malic enzyme, mitochondrial OS=Homo... [more]
MAOX_PIG3.316e-1975.00NADP-dependent malic enzyme (Fragment) OS=Sus scro... [more]
MAOX_HUMAN4.331e-1976.79NADP-dependent malic enzyme OS=Homo sapiens GN=ME1... [more]
MAOM_HUMAN4.788e-1869.64NAD-dependent malic enzyme, mitochondrial OS=Homo ... [more]
MAOM_ASCSU6.253e-1868.42NAD-dependent malic enzyme, mitochondrial (Fragmen... [more]
MAOM_MOUSE1.393e-1767.86NAD-dependent malic enzyme, mitochondrial OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionC32101A01EF RVDevelopN Citrus clementina cDNA clone C32101A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921088 ID=FC921088; Name=FC921088; organism=Citrus clementina; type=EST; length=179bp
TTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAGGTTATTGTT
GTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGGCTGTCAGGG
GATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCACTTGGAGGCA
TTCGTCCCTCAGCATGTTTGCCCATAACC
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