FC921088

Overview
NameFC921088
Unique NameFC921088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_PSYIN (NAD-dependent malic enzyme OS=Psychromonas ingrahamii (strain 37) GN=sfcA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.431e-16
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+ CLPI
Sbjct:  133 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPI 189          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_PSYCK (NAD-dependent malic enzyme OS=Psychrobacter cryohalolentis (strain K5) GN=sfcA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.431e-16
Identity = 39/57 (68.42%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+ CLPI
Sbjct:  133 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPI 189          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_PSYA2 (NAD-dependent malic enzyme OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=sfcA PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.481e-16
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  ++ ++VIVVTDGERILGLGD G  GMGIP+GKLALYTA GGI P+ CLPI
Sbjct:  133 DMLQNATKQKVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACGGISPAYCLPI 189          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ACIAD (NAD-dependent malic enzyme OS=Acinetobacter sp. (strain ADP1) GN=sfcA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.644e-16
Identity = 38/58 (65.52%), Postives = 49/58 (84.48%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPIT 179
            ++L+N  +R+++VIV+TDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LPIT
Sbjct:  138 DILQNVSKRNVKVIVITDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPIT 195          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_AERS4 (NAD-dependent malic enzyme OS=Aeromonas salmonicida (strain A449) GN=sfcA PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.984e-16
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+ CLP+
Sbjct:  137 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYCLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_AERHH (NAD-dependent malic enzyme OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=sfcA PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.984e-16
Identity = 37/57 (64.91%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N  +++++VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+ CLP+
Sbjct:  137 DMLQNATKQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYCLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHISS (NAD-dependent malic enzyme OS=Shigella sonnei (strain Ss046) GN=sfcA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHIFL (NAD-dependent malic enzyme OS=Shigella flexneri GN=sfcA PE=3 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHIF8 (NAD-dependent malic enzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SHIBS (NAD-dependent malic enzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=sfcA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
The following BLAST results are available for this feature:
BLAST of FC921088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
MAO1_PSYIN3.431e-1668.42NAD-dependent malic enzyme OS=Psychromonas ingraha... [more]
MAO1_PSYCK3.431e-1668.42NAD-dependent malic enzyme OS=Psychrobacter cryoha... [more]
MAO1_PSYA24.481e-1668.42NAD-dependent malic enzyme OS=Psychrobacter arctic... [more]
MAO1_ACIAD7.644e-1665.52NAD-dependent malic enzyme OS=Acinetobacter sp. (s... [more]
MAO1_AERS49.984e-1664.91NAD-dependent malic enzyme OS=Aeromonas salmonicid... [more]
MAO1_AERHH9.984e-1664.91NAD-dependent malic enzyme OS=Aeromonas hydrophila... [more]
MAO1_SHISS1.304e-1566.67NAD-dependent malic enzyme OS=Shigella sonnei (str... [more]
MAO1_SHIFL1.304e-1566.67NAD-dependent malic enzyme OS=Shigella flexneri GN... [more]
MAO1_SHIF81.304e-1566.67NAD-dependent malic enzyme OS=Shigella flexneri se... [more]
MAO1_SHIBS1.304e-1566.67NAD-dependent malic enzyme OS=Shigella boydii sero... [more]

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Properties
Property NameValue
Genbank descriptionC32101A01EF RVDevelopN Citrus clementina cDNA clone C32101A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921088 ID=FC921088; Name=FC921088; organism=Citrus clementina; type=EST; length=179bp
TTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAGGTTATTGTT
GTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGGCTGTCAGGG
GATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCACTTGGAGGCA
TTCGTCCCTCAGCATGTTTGCCCATAACC
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