FC921088

Overview
NameFC921088
Unique NameFC921088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SALDC (NAD-dependent malic enzyme OS=Salmonella dublin (strain CT_02021853) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SALCH (NAD-dependent malic enzyme OS=Salmonella choleraesuis GN=sfcA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SALAR (NAD-dependent malic enzyme OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_SALA4 (NAD-dependent malic enzyme OS=Salmonella agona (strain SL483) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ESCF3 (NAD-dependent malic enzyme OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ENT38 (NAD-dependent malic enzyme OS=Enterobacter sp. (strain 638) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECOUT (NAD-dependent malic enzyme OS=Escherichia coli (strain UTI89 / UPEC) GN=sfcA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECOSM (NAD-dependent malic enzyme OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECOLU (NAD-dependent malic enzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
[Close]
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECOLI (NAD-dependent malic enzyme OS=Escherichia coli (strain K12) GN=sfcA PE=3 SV=4)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3 
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193
The following BLAST results are available for this feature:
BLAST of FC921088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
MAO1_SALDC1.304e-1566.67NAD-dependent malic enzyme OS=Salmonella dublin (s... [more]
MAO1_SALCH1.304e-1566.67NAD-dependent malic enzyme OS=Salmonella choleraes... [more]
MAO1_SALAR1.304e-1566.67NAD-dependent malic enzyme OS=Salmonella arizonae ... [more]
MAO1_SALA41.304e-1566.67NAD-dependent malic enzyme OS=Salmonella agona (st... [more]
MAO1_ESCF31.304e-1566.67NAD-dependent malic enzyme OS=Escherichia ferguson... [more]
MAO1_ENT381.304e-1566.67NAD-dependent malic enzyme OS=Enterobacter sp. (st... [more]
MAO1_ECOUT1.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli (st... [more]
MAO1_ECOSM1.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli (st... [more]
MAO1_ECOLU1.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli O17... [more]
MAO1_ECOLI1.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32101A01EF RVDevelopN Citrus clementina cDNA clone C32101A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921088 ID=FC921088; Name=FC921088; organism=Citrus clementina; type=EST; length=179bp
TTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAGGTTATTGTT
GTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGGCTGTCAGGG
GATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCACTTGGAGGCA
TTCGTCCCTCAGCATGTTTGCCCATAACC
back to top