FC921088

Overview
NameFC921088
Unique NameFC921088
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length179
Libraries
Library NameType
RVDevelopNcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECO5E (NAD-dependent malic enzyme OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECO57 (NAD-dependent malic enzyme OS=Escherichia coli O157:H7 GN=sfcA PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECO55 (NAD-dependent malic enzyme OS=Escherichia coli (strain 55989 / EAEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECO45 (NAD-dependent malic enzyme OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECO27 (NAD-dependent malic enzyme OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ECO24 (NAD-dependent malic enzyme OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_CITK8 (NAD-dependent malic enzyme OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=sfcA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.304e-15
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LP+
Sbjct:  137 DILQNVPNHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPV 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_ENTS8 (NAD-dependent malic enzyme OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=sfcA PE=3 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 2.224e-15
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +I+VIVVTDGERILGLGD G  GMGIP+GKL+LYTA GGI P+  LPI
Sbjct:  137 DILQNVPIHNIKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTACGGISPAYTLPI 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_KLEP7 (NAD-dependent malic enzyme OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=sfcA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +++VIVVTDGERILGLGD G  GMGIP+GKL+LYT  GGI P+  LPI
Sbjct:  137 DILQNVPNHNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTTCGGISPAYTLPI 193          
BLAST of FC921088 vs. ExPASy Swiss-Prot
Match: MAO1_KLEP3 (NAD-dependent malic enzyme OS=Klebsiella pneumoniae (strain 342) GN=sfcA PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 3
Query:    6 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSACLPI 176
            ++L+N P  +++VIVVTDGERILGLGD G  GMGIP+GKL+LYT  GGI P+  LPI
Sbjct:  137 DILQNVPNHNVKVIVVTDGERILGLGDQGIGGMGIPIGKLSLYTTCGGISPAYTLPI 193          
The following BLAST results are available for this feature:
BLAST of FC921088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 133
Match NameE-valueIdentityDescription
MAO1_ECO5E1.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli O15... [more]
MAO1_ECO571.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli O15... [more]
MAO1_ECO551.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli (st... [more]
MAO1_ECO451.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli O45... [more]
MAO1_ECO271.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli O12... [more]
MAO1_ECO241.304e-1566.67NAD-dependent malic enzyme OS=Escherichia coli O13... [more]
MAO1_CITK81.304e-1566.67NAD-dependent malic enzyme OS=Citrobacter koseri (... [more]
MAO1_ENTS82.224e-1568.42NAD-dependent malic enzyme OS=Enterobacter sakazak... [more]
MAO1_KLEP73.794e-1564.91NAD-dependent malic enzyme OS=Klebsiella pneumonia... [more]
MAO1_KLEP33.794e-1564.91NAD-dependent malic enzyme OS=Klebsiella pneumonia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32101A01EF RVDevelopN Citrus clementina cDNA clone C32101A01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921088 ID=FC921088; Name=FC921088; organism=Citrus clementina; type=EST; length=179bp
TTCTTGAGGTTTTGAAGAACTGGCCTGAAAGGAGTATTCAGGTTATTGTT
GTCACAGATGGTGAGCGCATTTTGGGACTTGGGGATCTTGGCTGTCAGGG
GATGGGAATTCCTGTTGGGAAATTGGCTTTGTACACAGCACTTGGAGGCA
TTCGTCCCTCAGCATGTTTGCCCATAACC
back to top